Enterococcus raffinosus: J9537_08020
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Entry
J9537_08020 CDS
T07517
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
eraf
Enterococcus raffinosus
Pathway
eraf03030
DNA replication
eraf03430
Mismatch repair
eraf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eraf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J9537_08020 (holA)
03430 Mismatch repair
J9537_08020 (holA)
03440 Homologous recombination
J9537_08020 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eraf03032
]
J9537_08020 (holA)
03400 DNA repair and recombination proteins [BR:
eraf03400
]
J9537_08020 (holA)
Enzymes [BR:
eraf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J9537_08020 (holA)
DNA replication proteins [BR:
eraf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J9537_08020 (holA)
DNA repair and recombination proteins [BR:
eraf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J9537_08020 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HP_1247_M
DNA_pol3_gamma3
HTH_37
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
QXJ57995
LinkDB
All DBs
Position
complement(1629082..1630110)
Genome browser
AA seq
342 aa
AA seq
DB search
MNTQEAIQQIRNEPLKPVYLITGTEDYLIQEIRQAFMDRMKKDDLEELNFMSFDMEENGL
GAVIDEAETLPFFGDYRLIFVEKPYFLTGEKKSNVPDQDVDGLVEYLKQPLDTSIVVFWA
NYPKLDARKKITKALKKTTIVDAAPLQERDLRSFLQRYISNEHVKISKEAFDLFLRLTNF
DLSKAMNEIEKLLLLAGEGGTITLQLVEDLVPKTLEHNIFELTERILKGDTEKAYQTYEE
LHLQGEETIKLTAILIGQIRLLLQTKILQKTGYQQANIAETLGVHPYRVKLAMQQVAKFP
LELLVSMYDELVENDYEVKTGQADKEINFQLFILKTTEKIKK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacaggaagctattcaacagattagaaatgaaccattaaaaccggtttatttg
attactggaacggaagattatttgattcaggaaattcggcaagcttttatggatcgaatg
aaaaaagatgatttagaagaattaaattttatgtcctttgatatggaagaaaatggttta
ggtgcggtgattgatgaggctgaaaccttgcctttttttggtgattatcgattgattttt
gttgagaaaccttacttcttaacaggagagaaaaaaagcaatgtgccagaccaagacgtt
gatggattagtagaatatctgaagcagccattagacacatcgattgttgttttttgggcg
aactatcccaaactggatgctcggaaaaaaattacaaaagcactgaagaaaaccactatt
gttgacgcagctcctttgcaagagcgagatcttcgcagcttcctacagcgctatattagc
aacgaacatgtgaaaatttcaaaagaagcatttgatctatttttacgcttaacaaacttt
gatctttcaaaggcgatgaatgaaattgaaaaattacttctattagctggtgagggaggc
actatcactcttcaactagtagaggatttggtaccaaagacattggaacataacattttt
gaattgactgaacgaattttaaagggagacacagaaaaagcttatcaaacttacgaggaa
ttacatttgcaaggggaagaaacgatcaagctaacggcaatattaattggacagattcga
ttgcttttgcaaacaaaaattttacaaaaaaccggttatcagcaagctaatattgcagaa
acgttaggtgtccatccttatcgagtgaaattagcaatgcaacaagtcgcgaaatttcca
ctagaattacttgtatcgatgtatgatgagttggttgaaaacgattatgaagtgaagaca
ggacaagcagataaagaaattaactttcaattgttcattttaaaaacaaccgaaaaaatt
aaaaaatag
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