Enterococcus raffinosus: J9537_14525
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Entry
J9537_14525 CDS
T07517
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eraf
Enterococcus raffinosus
Pathway
eraf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eraf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J9537_14525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eraf03021
]
J9537_14525 (rpoC)
03400 DNA repair and recombination proteins [BR:
eraf03400
]
J9537_14525 (rpoC)
Enzymes [BR:
eraf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J9537_14525 (rpoC)
Transcription machinery [BR:
eraf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J9537_14525 (rpoC)
DNA repair and recombination proteins [BR:
eraf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J9537_14525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PRC
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QXJ59175
LinkDB
All DBs
Position
complement(2975291..2978944)
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDPGNTSLEKKQLLTEREYREKRDQYGQEFHAAMGAEAIKQLLD
QVDLDGESAELKEELKTAQGQKRTRAIRRLDVLEAFRSSGNQPGWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSARSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMKELVQREIASNIKNAKRKIERQEDVVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCEAYNADFDGDQMAVHLPLGEEAQAEARMLMLAATHIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMNEAVLAWRNGYVHLHSRVAVD
PNTLGDKPFTEEQKERMLITTVGKIIFNEIMPQEFPYLNEPTDFNLTQYTPDKYFVEKGA
DIPAAIKEQEIILPFKKKNLGNIIAEVFKRFKVTDTSMMLDRMKDLGYKHSTHAGMTVGI
ADIMALAEKQEIIDNAHKQVGTITKQFRRGLITDDERYERVIAVWNAAKDEIQQRLMESL
DAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGQIMELPIISNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLEISAIREGNEIIESLE
ERLVGRYTQKSVMHPETGEVLLPADALISEADAKRIIDAGVEKLTIRSVFTCNTKHGVCK
HCYGRNLATGDDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGLAVITEVTGEVVEIAEDAATRTKEVTVKGETDTRTYTVPYTARMKVVEGDMIH
RGAQLTEGSIDPKHLLQVRDVISVETYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKVR
VMDPGDTDILPGTLLDIADFKDQNYNTLVAGGTPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMATYRNMEPKEVVVASENVYSIS
DIEAQMAAEDALNNPLS
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaagtatgcaaataggtttggcttctcctgaaaaaatc
agaagctggtcatacggtgaagtaaaaaaaccggaaaccattaactaccgtacattgaag
cctgaacgcgaagggttattcgatgaaagaatttttgggccaaccaaagactgggaatgt
gcctgtgggaaatacaaacggatccgttacaaagggattgtctgcgaccgttgtggtgtt
gaagtcactcgttcgaaagttcgccgtgaacggatgggtcacattgaactagcagctcct
gttacacatatctggtatttcaaaggaattccttctcggatgggtcttgtgctagacatg
agtccacgtgcgttggaagaaatcatctattttgcatcgtatgtcgtaatcgatccaggt
aatactagcctagagaagaaacaattattgactgaacgtgaataccgtgaaaaacgtgat
caatacggtcaagaattccatgcggcaatgggtgccgaagctatcaaacaattattagat
caagtggacttagatggagaatcagcagaattaaaagaagaattgaaaacggctcaaggt
caaaaacgtacacgggcaatccgtcgtttagatgttttagaagcgttccgttcttctggc
aatcaaccaggctggatggttatggatgttatccctgtcattccgccagatctacgtcca
atggttcaattagaagggggtcgttttgcgacttctgacttgaacgatctctaccgtcgt
gtaatcaaccgtaacaaccgtttgaaacgtttgttagatttgaatgcaccaaacatcatt
gttcaaaatgaaaaacgaatgctgcaagaagcagtcgatgccttaatcgataatggtcgt
cgtggccgtccagttactggacctggtaaccgtccattgaaatctttgtctcacatgttg
aaagggaaacaaggtcgtttccgtcaaaacttgctgggtaaacgtgtcgattactctgcc
cgttccgttatcgttgttggacctttcttgaagatgtatcaatgtggtctgccaaaagaa
atggcgatcgaattgttcaaacctttcgtaatgaaagaattggttcaacgtgaaattgct
tcaaatatcaaaaacgcaaaacgtaaaatcgaacgtcaagaagacgttgtatgggatgtc
ttggaagaagtaatcaaggaacatccagtattgcttaaccgggcacctacgttgcacaga
ctaggtatccaagccttcgaaccaatcttagtagaaggtcgcgcgattcgtcttcaccca
ttagtatgtgaagcctacaatgccgatttcgatggagaccaaatggctgtccatctacca
ctaggagaagaagcacaagcggaagctcgtatgttgatgttggccgcaacacacatcttg
aaccctaaagatggtaaaccagttgttaccccatctcaagatatggtcttggggaactac
tacctaacaatggaagaagaaggccgcgaaggtgaaggaatgatcttccgtgacatgaat
gaagctgttttagcttggcgtaatggctacgttcacttgcattcacgtgtggctgttgat
cctaatactttaggcgacaaaccattcactgaagaacaaaaagaacgtatgctgatcacg
accgttgggaaaattattttcaacgagattatgccgcaagaattcccttacttgaacgaa
ccaacagatttcaacttaacacaatacacccctgacaaatactttgtcgaaaagggtgca
gatattccagcagcgattaaggaacaagaaatcatcttgccattcaagaagaaaaatctt
ggaaacatcatcgctgaagtcttcaaacgtttcaaagtcacggatacatcaatgatgctt
gaccgtatgaaagacttaggctacaaacattcaacacatgctggtatgaccgttggtatc
gcagatatcatggcgctggcagaaaaacaagaaatcatcgacaacgcccacaaacaagtt
ggcacgatcacgaaacaattccgtcgcgggttgattactgacgacgaacgttatgaacgt
gttatcgctgtttggaatgcggcaaaagatgaaattcaacaacgactaatggaatcttta
gatgcgaagaacccaatcttcatgatgtctgattctggagcccgtggtaacatctccaac
tttactcagcttgctggtatgcgtggactgatggccgctccgaatggacaaatcatggaa
ttgccgatcatctcaaacttccgtgaaggtctatctgtcttggaaatgtttatctctact
cacggggctcgtaaagggatgaccgataccgccttgaagacagccgattcaggttacttg
actcgtcgtttggttgacgttgcccaagatgttatcgtacgtgaagaagattgcggtact
gaccgcgggttggaaatctctgcgattcgcgaaggaaacgaaattatcgaatcattagaa
gaacgtctagttggacgttatacacaaaaatctgttatgcatcctgaaacaggtgaagtg
ttactacctgcagacgcattgattagtgaagcagatgcgaaacgcatcattgacgctggc
gttgagaaattaacgatccgctcagtcttcacatgtaatacgaaacatggtgtatgtaaa
cattgttacggacgcaacttggcaactggcgacgacgttgaagtcggtgaagcagttggt
accatcgccgctcaatcaatcggtgaacctggtactcagttgaccatgcgtacattccat
accggtggggttgccggagacgatatcacacaaggtcttcctcgtgtccaagaaatcttc
gaagcacgtaatcctaaagggttggctgttattaccgaagtaacaggtgaagttgttgag
atcgctgaagatgcagcaactcgtacgaaggaagttaccgttaagggtgaaacagatact
cgtacgtatacagttccttacacagctcgtatgaaagtcgttgaaggggacatgattcac
cgtggggcacaattaacagaaggatcaatcgatccaaaacacttgctgcaagttcgcgat
gttatctctgttgaaacgtacctgttgcgtgaagtacaacgtgtttaccgtatgcaaggg
gtagaaatcggcgataaacatattgaggtaatggttcgtcaaatgttgcgtaaagtccgc
gtaatggacccaggcgacacagatatcttgccaggtactttgcttgatattgctgacttt
aaagaccaaaactacaatactttggttgctggtggcacacctgcgacatctcgtccagtc
ttgcttggtatcaccaaagcatcattggaaacaaacagcttcttatctgccgcatcattc
caagaaaccactcgtgtgttgacggatgctgcgatccgcggtaagaaagatccattactt
ggattgaaggaaaatgttatcatcggtaagattatccctgccggtacaggtatggcgaca
taccgtaacatggaaccaaaagaagtcgttgtggcaagcgaaaatgtttacagtatctct
gatattgaagcacaaatggctgctgaagacgctttgaacaatccattaagttaa
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integrated database retrieval system
