Erysipelotrichaceae bacterium I46: A4V01_04120
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Entry
A4V01_04120 CDS
T04439
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
erb
Erysipelotrichaceae bacterium I46
Pathway
erb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V01_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erb03019
]
A4V01_04120
03400 DNA repair and recombination proteins [BR:
erb03400
]
A4V01_04120
Enzymes [BR:
erb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V01_04120
Messenger RNA biogenesis [BR:
erb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V01_04120
DNA repair and recombination proteins [BR:
erb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4V01_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
ANU68180
UniProt:
A0A1C7HKZ4
LinkDB
All DBs
Position
826399..828201
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AA seq
600 aa
AA seq
DB search
MMKDYEVLKKYFGYESFREGQQELITNILERHDVLGIMPTGAGKSICYQVPAVMLEGITL
VISPLISLMKDQVGTLNEAGIRAAYLNSSLSYAQYHKALSLARGYTYKIIYVAPERLMSD
EFLSFAKEMKISMVCVDEAHCVSQWGQDFRPHYLHIREFLKEMPQRPIVSAFTATATTQV
KEDILQLLDMKDPYTITTGFDRKNLYFAVEKPKDKYQALLHYVKQHTEDAGIVYCLSRKT
VEEVCDRLCADGFAATRYHAGLSDAERMNNQDDFIYDRKTIMVATNAFGMGIDKSNVRFV
VHFNMPKNMESYYQEAGRAGRDGEQADCILLYSGKDVRLNQFLIEQGSGHEDMEEAVRME
LQQKEKERLKSMTFYCTIPSCLRHYMLKYFGEESDGFCGSCSNCLTQYEECDIRLEASRL
VECIRHSGERFGKTMIVDIVKGSANAKIKSYHLDRNPAYGSLKDSSRNHLYEILQHLQFQ
GILKQSEDGYSVLSIHQEELLPTDGPLMMKIVKEKQVQNPVVQTDSGDNRLFELLRICRS
QLARKAHVPPYMVFSDKTLHDMCAKAPHSREEMLGVSGVGEVKYDKYGEAFLKVIASFDS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaggattatgaggttttaaaaaaatatttcggttatgaaagctttcgggaaggt
cagcaggagctgataacaaatattctggagcgccatgatgtgttgggaatcatgccaacc
ggggcaggtaaatctatctgctatcaggttccggccgtgatgctggagggaatcacactg
gttatctctcctttgatttctctgatgaaggatcaggtgggaaccttaaacgaagctggt
attcgtgcagcgtatttaaacagctccctatcctatgcccagtatcacaaggcactttct
cttgcacgcggatatacctataagatcatatatgtagctccggaaagactgatgagcgat
gaatttttaagctttgcaaaagagatgaaaatctccatggtatgtgtggatgaggcgcac
tgtgtcagccagtgggggcaggattttcgaccgcattacttacatattcgggaattctta
aaggaaatgccgcagcgaccgattgtttctgcatttactgcaacggcaaccacacaggta
aaggaagatattcttcagctgctggatatgaaggatccttataccataacgacaggcttt
gatcgtaagaatttgtactttgctgtggaaaagccgaaggataaataccaggcacttctg
cattatgtaaaacagcatacggaggatgcgggcattgtctactgtctgtcaagaaaaaca
gtggaggaggtctgtgatcgactatgcgccgatggctttgcggcaacacgctatcatgcc
ggtctgagcgatgcagagcgtatgaataatcaggatgatttcatctatgacagaaaaacc
atcatggtcgctaccaatgcgtttggaatggggattgataaatccaatgtgcggtttgtc
gttcatttcaatatgcctaaaaatatggaaagctattatcaggaggcgggaagagccggg
cgtgacggcgaacaggctgattgtatcttgctgtacagcggcaaggatgtccgtttgaat
cagtttttgattgaacagggaagcggtcatgaggatatggaagaggctgttcgcatggag
ctgcagcaaaaggaaaaggaacggttgaaatccatgaccttctattgtacgattcccagc
tgtcttcgtcattacatgttaaaatacttcggtgaggaaagtgatggcttctgcggcagc
tgctcaaactgtctgacacaatatgaggaatgtgatatccgtttggaagcatcccgtctt
gtggaatgcatccgtcacagcggagaacgcttcgggaaaacgatgattgtagatattgtt
aagggcagtgcgaacgccaaaatcaaaagctatcatctggatagaaatccggcttatggt
tcgttgaaggacagctcacgcaatcatctttatgaaatccttcagcatctgcaatttcag
ggtatcctgaaacagagtgaggacggctattcggtactgtcgattcatcaggaggagctg
cttcctacagatggtccgctgatgatgaaaattgtcaaggagaagcaggtgcagaaccct
gtggtacagacagatagcggcgataaccggctgtttgaattgctgagaatctgccgttcc
cagctggcacgaaaagcccatgttcctccgtacatggttttctccgataagacactgcat
gatatgtgtgcgaaagcaccgcattcaagagaagaaatgctgggagtcagcggtgtcggt
gaagtgaaatatgataagtacggagaagcctttttaaaggtcatcgcatcctttgactca
taa
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