Erysipelotrichaceae bacterium I46: A4V01_04475
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Entry
A4V01_04475 CDS
T04439
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erb
Erysipelotrichaceae bacterium I46
Pathway
erb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V01_04475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erb03019
]
A4V01_04475
Enzymes [BR:
erb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4V01_04475
Messenger RNA biogenesis [BR:
erb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V01_04475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
P-loop_SecA
Utp25_C
DUF6991
HP0268
Cas3-like_C_2
UvrD-helicase
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANU68244
LinkDB
All DBs
Position
904889..906202
Genome browser
AA seq
437 aa
AA seq
DB search
MKFQTLHITEPILKAVKEQGYVVPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTI
QMLKKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILKAG
VDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQTLF
FSATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKLLQKNRV
QNALVFTRTKSNANRLAKYLNENGVTTGVIHGNKSQNARQQALLQFKEGKSRVLVATDIA
ARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKNIEKLIR
MHIPVVEDREFPMRNLEPAASAQSQNRRRQKPAAKPSASNRSENRSAAVKHQTSAAAPKR
NNRRRRPQSQKQPAHTA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaaacattacatataacagagcctattttaaaggctgttaaagaacaggga
tatgttgttcccacaccaattcaggaacaggcaataccctacgctctgcagggtcgtgac
attctcggctgtgcacagaccggtaccggaaaaacagcagcattttccattccgacgatt
cagatgctgaaaaagcattataaacaaagcatccgctccctaatcgtaacaccgaccagg
gagcttgccatacagattcaggaaaacatcacagcttatgcccaatatacaacaatacgc
agtgccgttatctttggcggtgtaccgcagaagccgcaggaacgtattttgaaggccgga
gtggatattctggtcgcaacacccggtcgattgaatgatctgattcaacagggcataatt
gacatcagccatattgaaatcttcatactggatgaagcagaccgtatgctggatatggga
tttcttccggatgtaaagcggattatcgcaaagctgcccaaaaggaagcagacattgttt
ttcagtgccaccatgccttcagaaatccgtaaacttgcccagtccttactgcatgagcct
gtcagcattgaggtgacaccggcatcaactacagtggaaaagatcgatcagagtctgtat
tatgtggacaaagcaaacaaaaaacgcctgctgttaaagcttttacagaagaaccgcgta
caaaatgcacttgtattcacaaggacgaaaagcaatgcaaaccgtctggcaaagtatctg
aatgaaaacggtgtaacaaccggtgtgattcatggaaataaatctcagaatgcgcgtcag
caggcattgctgcaattcaaggaaggaaaaagccgggtacttgttgctacagacatcgcc
gcaagaggaatcgatgttcaggagctgagtcatgtatttaactttgatatccccaatgag
gctgaagtatatgtacatcgcatcggacgtaccggcagagccggcagacagggctgtgcc
attgcattctctgactgcaatgaagcagagtatgtaaagaacatcgaaaagctgattcgt
atgcacataccggttgtggaggaccgcgagtttccaatgcgtaatctggagcctgcggca
tctgcacagtcgcagaatagaagaaggcagaaacccgcagcaaagccttccgcatccaat
cgaagcgagaaccgcagtgctgcagtgaagcaccaaacatcggcagctgcaccaaagcgg
aacaaccgcagacgcagaccgcagtcacaaaagcagccggcacatacagcataa
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