Eremothecium cymbalariae: Ecym_2509
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Entry
Ecym_2509 CDS
T02237
Name
(RefSeq) Hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
erc
Eremothecium cymbalariae
Pathway
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_2509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_2509
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Ecym_2509
mRNA degradation factors
5'-3' decay
Decapping complex
Ecym_2509
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
11468264
NCBI-ProteinID:
XP_003645047
UniProt:
G8JPX2
LinkDB
All DBs
Position
2:complement(993339..996017)
Genome browser
AA seq
892 aa
AA seq
DB search
MSFFGFDKKGSRNGSQEEDPNKELDFEETYQGFGEHEEEEDDYLNAETFGDGADLGNDFD
FGYGKDSVSKANSATVNSSYVQPTVSYAAAASSQPQKFDENVDLKPMESLWSNQSLQTPA
QPPNQGVLSYQHVGRQQPKQQQSPQQQQSPQQSQAIPPPPQQAQIAMPPPHGFIGMQPQG
IPPPGYAFAPQGYVQQHPQQYQYAPQGMPPQFQHIPIIMNQQLTQSQGSKPQQVQPPMPP
QIAMPPPPPPGLLQELPQHQQPSAVISPQQACTQLAEQQPQQQPQQQPQQEQQEQQQEQQ
QEQQQEQQHLSPPFQRQSPLSQRGLVSPSQQNEILTPPHTPREFRRSTMRRHHEPLTEEE
QKRLQIRQAKVDKILRHSGVMTPRDKDFITRYQLSQIVTEDPYNEDFYFQVYKIIQRGGI
VGESNKGLIARAYLEHSGHRLGGRYKRADVALQRMQSQVEKAVTVAKERPQKNKDLDSAK
EGVLGKISSTMNSRAPRRQLQIPTHKEDESDHDVLSAVSSSALDEVNHSLESVDISKSRV
RRRSSYIFSSMDQSSILSRSGGRKFVLSLIESIYKEVLELEAQLRSGKQAEATKLWEVLH
IDDDSHEVSPFISILSFDKGVKIMPRIMNFLSKEQKMKLFSCFFNELSHLNIIVKSSYKT
NPMPTDSQLKKIELFQSAFLKIIVSFLSNSAEFIEVIGLLLCLIRNNNISFISTSKIGLN
LITVLISRAALIKQDINRGNASSMAELSTWNEIYDKLFTSLETKLLAVFPPKEYMDAIIS
VTYQALGSGSSNSGSGETPQPLNYSLPQFYDQSYIWQFFASLALSGKLNHQRIIIDEIRD
EIFGTISRAEELSNQSQDPSFAYQKDKMYQDLNLFLNVIGLVARDGEISELK
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttttgggttcgataagaaaggctctcgtaacggatcccaggaggaagatcct
aataaagaattggattttgaagaaacataccaaggctttggtgaacacgaggaggaagaa
gacgattatttaaatgctgagacatttggtgatggtgcagatttaggtaatgattttgat
tttggttatggaaaggattctgtgtcaaaggcgaatagcgcgaccgtaaattcatcgtat
gttcagcctacggtttcttatgcagcagcagcttcttctcaacctcagaagtttgatgaa
aatgtagatttgaagccaatggaatctctatggagcaaccaatctttgcaaactcctgca
caaccacctaatcaaggggtactttcctatcagcatgtagggaggcagcagcctaagcag
cagcagtctccacagcagcagcagtctccacagcaatcgcaggctattccaccccctcca
caacaagcccagatagctatgccgcctcctcatggttttattggtatgcaacctcaggga
attcctcctccaggctatgcttttgcccctcagggttatgttcagcagcaccctcaacag
tatcaatatgctccacagggaatgccaccccaatttcaacacattcctatcattatgaat
cagcagctcacacaatctcaaggttccaagcctcagcaagtgcagcccccaatgccacct
caaattgctatgccgccaccgccaccgccaggtctgctacaagagctcccacagcatcag
caaccttctgcggttatatccccgcagcaggcatgtacccagctagctgaacaacaacca
cagcaacaaccacagcagcaaccacagcaagaacaacaagaacaacaacaagaacaacaa
caagaacaacaacaagaacaacaacacctttcacctccttttcaacggcaatctccactt
tctcaacgtgggttggtgtcaccttctcagcaaaatgaaatccttactcctccacatact
ccaagggagttccgtcgtagcactatgaggagacaccatgaaccacttactgaagaagaa
caaaagcgcctgcaaatccgccaggctaaggtcgacaagattttgagacactcaggtgtt
atgactccccgtgataaggactttattactcgttatcaattatcacaaattgtgaccgaa
gatccttataacgaagatttctacttccaggtctataaaataattcaacgcggtgggatc
gttggagaatcaaataaaggcttaattgctcgagcttacttagaacactctggacaccgc
ctgggggggcgttataagcgtgcggatgttgcacttcaacgaatgcagtcgcaggttgaa
aaggctgttaccgtcgccaaggaaaggcctcaaaagaacaaggatttagatagcgccaag
gaaggtgtgttgggcaagatatcctctactatgaactctagagcgcctcgcaggcagcta
caaattcctactcacaaggaagatgaatctgatcatgatgtgttgtcagctgtatcttcg
agcgctttagatgaagtgaatcactctttggagagtgtagacatcagcaagtccagagtc
agaaggagatcgtcttatatctttagttctatggaccaaagttctattttgtcgcgttct
ggaggtagaaagtttgtgttgtctctgattgagtcaatatataaagaagttttggaatta
gaagcacagttaagaagtggcaaacaggctgaagctactaagctatgggaggttctacac
attgatgatgattcccacgaagttagtccattcatttctattctatcatttgacaagggt
gtaaaaataatgcctagaatcatgaactttttatccaaagaacagaagatgaaattgttt
tcttgtttcttcaatgagctatctcatcttaatatcattgtgaagagttcttacaagacg
aatccaatgccaacagattctcagttaaagaaaattgaactattccagtctgcatttttg
aaaattattgtttcatttttatcaaatagcgccgaatttatcgaagttatcggcttactt
ttgtgtttgattagaaacaacaatatatcgttcataagcacttcaaagattgggttgaac
ttgattactgtgttgatctctcgtgctgcgttaatcaaacaagatattaatagaggcaat
gcctcttctatggcagaactatctacttggaatgaaatttatgataaattattcacctct
ctcgagaccaaattattggctgttttcccacccaaggagtatatggatgctattatcagt
gtcacctaccaagctcttggcagcggtagctcgaattccgggtcgggtgagacgccccaa
ccgctaaactattctttacctcagttctacgaccagtcgtacatttggcaattttttgct
tctttggctttatcaggaaaactaaaccatcaaaggattattattgatgaaattagggat
gagatatttggtactatctccagagccgaagaattaagtaaccaatcacaagacccatcc
ttcgcctaccagaaagataagatgtatcaagatttgaatttgtttttgaacgttattggc
ttggttgctcgtgacggtgaaataagtgagctaaaataa
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