Eremothecium cymbalariae: Ecym_3053
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Entry
Ecym_3053 CDS
T02237
Name
(RefSeq) Hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Ecym_3053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
erc03041
]
Ecym_3053
03009 Ribosome biogenesis [BR:
erc03009
]
Ecym_3053
Enzymes [BR:
erc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Ecym_3053
Spliceosome [BR:
erc03041
]
Complex A
U2 snRNP components
U2 related factors
Ecym_3053
Complex B
Ecym_3053
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
Ecym_3053
Ribosome biogenesis [BR:
erc03009
]
Eukaryotic type
90S particles
Helicases
Ecym_3053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_22
HA2_N
AAA_19
Flavi_DEAD
SRP54
ResIII
AAA_23
NB-ARC
AAA_7
AAA_30
ABC_tran
nSTAND3
Motif
Other DBs
NCBI-GeneID:
11472064
NCBI-ProteinID:
XP_003645382
UniProt:
G8JQZ6
LinkDB
All DBs
Position
3:99159..101456
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AA seq
765 aa
AA seq
DB search
MSKRKLSSNSRQDSVKTSIPEHAAEVAEALTALHPVEFDEPMVHHDSGEFKGLERNKTTA
EQAQKLEQGKVNPFTGRSYSDNYFKVLKVRRNLPVHSQRDEFLKLYQENQIMVFVGETGS
GKTTQIPQFVLFDEMPHLRNFQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN
KTSNKTILKYMTDGMLLREAMEDHDLKRYSCIILDEAHERTLATDILMGLLKEVVKRRAD
LKIIIMSATLDAEKFQKYFNNSPLLAVPGRTHPVEIYYTPEFQGDYLDSAIRTVLQIHAT
EAEGDVLLFLTGEEEIEDAAKKITLEGDQLIREQGCGPLKVYTLYGSLPPHQQQRIFDPA
PQSVNGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKAS
AQQRAGRAGRTRPGKCFRLYPEEAFKKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF
DFMDPPAPETMMRALEELNYLQCLDDEGNLTSLGRLASQFPLDPMLAIMLIGSTEFNCAQ
EILSIVAMLSVPTVFVRPLKDKKRADDAKNIFAHPDGDHLTLLNVYNSFKSDEAYQYGIH
QWCRDHYLNYRSLSSADNIRSQLERLMKRYNLELNTTSPDSPKYFINIRKALCAGFFMQV
AKKRSTGKGYITVKDNQDVLIHPSSTALRQDASWVIFNEFVLTTQNYIRTVTSIRADWLL
ELAPAYYDLDNFQRGDIKTELQAIKRANDRLKLMREDYAKRSKED
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagagaaaattgtcatctaatagtcgccaagactcagtgaaaacttctattccg
gagcatgcagcagaggtggctgaagccttgacagcactccatcctgttgaattcgatgag
ccaatggttcatcatgattcaggtgaatttaaaggccttgaacgtaataaaactacagct
gaacaagctcaaaagttagaacagggaaaagtaaatccctttacaggcaggtcatattct
gacaattattttaaggttttaaaggtaagaaggaacttgccggttcattcgcagagagac
gagtttttaaagctttatcaagagaatcagattatggtgtttgttggtgaaacgggttca
ggtaagacaacgcagattcctcaatttgtgttgtttgatgaaatgccacatttaaggaac
tttcaggttgcttgtacgcagccacggagggtggcagccatgtctgttgctcagagggtt
gcagaggagatggatgttaaacttggagaggaagttggttattcgattagattcgagaat
aagacgtcgaataagactattttgaagtatatgacagatggtatgcttttgagagaagct
atggaggatcacgatttgaagcgttactcttgcatcattctggatgaagcacatgaacgt
accttggccaccgacatattaatgggattgttgaaagaggtggttaaacggagagcagac
ctaaagattattattatgtctgctacattagatgcggaaaagttccaaaaatacttcaat
aattcgccactactagctgttcctggtaggactcatcctgttgagatatactatactcca
gaattccaaggcgactacttggactctgctatacgtacagtcctgcaaattcatgctacg
gaagctgaaggtgatgttttattgttcttgacaggtgaagaagagatcgaagatgctgcg
aaaaagataaccttagaaggggaccaactaattagggaacaaggttgcggccctttaaag
gtatataccttatatggttctttaccgccgcatcaacaacaacgtatttttgatccagct
ccacagtccgttaatggtagacctggcagaaaggttattgtgtctactaacattgctgaa
acttctttaacaatcgatggtattgtatatgttgtagacccaggattttcaaagcagaaa
gtttataatccaagaattagagtcgaatcactcctggtttcccctatatccaaggcttct
gcccaacaaagagccggtcgtgccggtcgtactagaccaggtaagtgtttcaggctgtat
cctgaagaagctttcaaaaaggaactcattgaacagtcatatcctgaaattctacgttct
aacctatcatcaaccgttttggaattaaagaaattaggcatagatgacttggttcatttt
gattttatggatccaccagctccggagacaatgatgagggctttggaagagttgaattat
ttacaatgcttggatgatgaaggtaatttgacttcactgggtaggttagcctcccagttc
ccattggacccaatgttggcgatcatgttaatcgggtccacagagtttaactgtgcacaa
gaaattttgagtattgttgccatgctttctgtaccaactgtatttgttcgtcccttaaag
gacaaaaagcgtgcagatgatgctaaaaacatttttgctcatccagatggtgatcacctt
accttattaaatgtttacaatagctttaaatccgacgaggcgtaccaatacggaatacat
caatggtgtagggatcattaccttaattacaggtctttgtcctccgcagataacatccga
tctcaactagaaaggctaatgaaacggtacaatctcgaacttaatacaacttctcctgat
agtccaaagtattttatcaatatcaggaaagcattatgtgctggtttctttatgcaggtt
gctaagaagagatctactggtaagggttatatcaccgtaaaagataatcaagacgtgcta
atccatcctagtagtactgctctccgtcaagatgcaagttgggtcattttcaatgagttt
gttttaaccacgcagaactatattagaacggttacctctataagggcagactggttgtta
gaattagcccctgcatattacgatttggataacttccagagaggtgatataaaaactgaa
ttgcaagcgattaaaagagcaaatgatagacttaaacttatgagagaagattatgctaaa
agatcaaaggaagattaa
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