Eremothecium cymbalariae: Ecym_3113
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Entry
Ecym_3113 CDS
T02237
Name
(RefSeq) Hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Ecym_3113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erc03021
]
Ecym_3113
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_3113
Transcription machinery [BR:
erc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Ecym_3113
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Ecym_3113
U7-dependent histone pre-mRNA processing factors
Ecym_3113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
CjCas9_PI_CTD
Motif
Other DBs
NCBI-GeneID:
11468677
NCBI-ProteinID:
XP_003645438
UniProt:
G8JR52
LinkDB
All DBs
Position
3:208108..210429
Genome browser
AA seq
773 aa
AA seq
DB search
MIEDKPDTNSFRFFGLGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFNL
SKVDVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNGTA
ASSGDENLYTDEDLAESFDKIETVDFHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRI
LFTGDYSRELDRHLNSAEVPSLPSDILIVESTFGTATHEPRVSKERKLTQLIHTTVAKGG
RVLLPVFALGRAQEIMLILDEYWSQHAEELGTGQVPIFYASNLARKCMSVFQTYVNMMND
KIRKKFRDSQTNPFIFKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEK
NLVLITGYSVEGTMAKFLILEPESIPSINNPDVTIPRRCQVEEISFAAHVDFRENLEFVE
KIGAPSIILVHGESNPMGRLKSALLSNFSPLKGTENEVHVYNPRNCVAVDIEFKGVKIAK
AVGNIVEEMVPTNEDEDEEAEDKNNTGEKDKISVSEAPQEDELVGKEGNMQHDLEEERVI
SGILVSDEKNFDLNLVSLSDLREHHTDLTTTVLKERQTVHVDCRNELIFWHLCQMFGEIE
VLVDNEGVTLAKTDPAPEDVKPGELVVRVMGDVKLSVVDHVATLEWTQNIISDSVADSIV
AILLSVDSSPASVKMTSHSCNSHDHSEDSEVVWKIKQIAKLFTEQFGDSFTLLLGKDNEV
PEHEDIKGSVTIGKNSATVNFSKMAVEDCNSNPLKGRIESILGIGADLVAPLC
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagataaaccagatacgaactcattcagattttttggccttggtggtagcaat
gaggttggtcgctcctgtcatatccttcaatacaagggcaaaacggtgatgttagatgcg
ggtgttcatcctgcacatcaaggtattgcttctttgccgttttatgatgaatttaatctt
tcaaaagttgatgtcctattgatttctcactttcatttagatcacgctgcttctctgcct
tacgtcatgcaaaggaccaattttcaaggtagggtgttcatgacccaccccacaaaggca
atctatcgttggttgttaagcgattttgtcaaggtcaccaatattgggaatggtacagca
gcttcatccggggatgaaaatttgtatactgatgaagatttagcagaatcatttgacaag
attgaaacagtggattttcattctacgatcgatgtaaatggtatcaagtttacagcttac
catgcaggtcatgtacttggtgcagctatgtttcaggttgagattgctgggctaaggata
cttttcactggcgactattcaagggaattagatcgtcatttaaacagtgcagaagttcct
tctttgccctcggatattctgatcgtagaatcaaccttcggcactgctacacatgagcca
cgagtaagcaaggagcgtaaattaacgcagttaattcatacgaccgtagctaaaggtggt
cgtgttcttcttcctgtgtttgcattaggaagagcacaggaaatcatgttgattttagat
gagtactggtctcagcatgcagaagagttaggcaccggccaagtacccatcttttatgcc
tctaatttggcaagaaagtgtatgtcggtttttcagacatatgtaaatatgatgaatgat
aaaatcaggaagaaatttcgggactcgcagacaaatccatttatcttcaaaaatatttct
tatttaaagaatttggatgaatttcaggatttcggtcctagcgttatgttagcttccccc
ggaatgttgcagaacggcttatctagagacttgctagaaaaatggtgccctgacgaaaag
aacctggtcctaataactggttattctgtggaaggtactatggctaagtttctgatattg
gaaccagaatcaattccgtctataaacaatcccgatgtaaccataccaaggcgttgccag
gtggaagagatatcgtttgccgcacatgtagattttagggaaaatttggaatttgttgaa
aagattggtgcgccatcaattattctggtacatggagaatcaaaccccatgggccgttta
aagtcagctctactttctaacttcagtccattgaagggaaccgagaatgaggttcatgtt
tacaaccctagaaactgtgtcgccgttgatatagaatttaagggtgtcaaaattgccaag
gctgtcggtaatatcgtggaggaaatggtccccacaaatgaagacgaagacgaagaggca
gaagataaaaataatacaggtgaaaaagataaaatcagtgtgtctgaagcaccacaagaa
gatgagttagtaggaaaagagggaaacatgcagcatgacttagaagaggaacgcgttatt
tctggtatattggtgtcggatgaaaagaactttgatctaaatctcgtttccctatctgat
ttaagagaacatcacacagacctaacaactaccgttttgaaggaacgacagacagtccac
gtggactgcagaaacgaattaattttctggcatttatgccagatgtttggtgagatagag
gtccttgtagataacgagggtgtcactctagctaaaactgatccagcaccagaagatgtg
aaaccaggtgaattggtggtcagagttatgggtgatgtcaaattatccgtggtagatcat
gtcgccacactggaatggacacagaatattataagtgactccgtcgctgatagtattgtc
gccattctactgagtgttgactcttctccagcaagcgtaaagatgactagccacagttgt
aattctcatgatcattcagaagactcagaagttgtttggaagattaaacaaatcgccaag
ttatttacggaacagtttggcgacagcttcactctgctcctaggcaaagacaacgaagtc
cctgagcatgaggacatcaaaggttctgtaactattggtaaaaactccgctacggtcaac
ttttcaaagatggctgtcgaggactgtaattcaaatccattgaagggaaggattgaaagc
attttgggtattggagcggacttagttgctccattgtgttga
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