Eremothecium cymbalariae: Ecym_3216
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Entry
Ecym_3216 CDS
T02237
Name
(RefSeq) Hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
erc
Eremothecium cymbalariae
Pathway
erc03022
Basal transcription factors
erc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Ecym_3216
09124 Replication and repair
03420 Nucleotide excision repair
Ecym_3216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erc03021
]
Ecym_3216
03400 DNA repair and recombination proteins [BR:
erc03400
]
Ecym_3216
Transcription machinery [BR:
erc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Ecym_3216
DNA repair and recombination proteins [BR:
erc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Ecym_3216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
UvrA_DNA-bind
DUF7675
Motif
Other DBs
NCBI-GeneID:
11468775
NCBI-ProteinID:
XP_003645530
UniProt:
G8JRE4
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All DBs
Position
3:410037..411884
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AA seq
615 aa
AA seq
DB search
MSHSGAAVFKKVSGMLTIDEEASPAVLTWRSTDGDKSHTVLLNTINKFQATPASSDKMML
RLVAKVDETKKIKDSEGNEVPPKPVVHKFSFNNRIVMDNIKETLQHIIARYKDEDVFEEK
KRKEEFYAPVTSQEDSLINTTSLDDSLSQEKLLTNLKLQQSLLRENRNLMKTFQEAVIKA
GLPPQEFWSTRIPLLRAFALTTSQKIGPYNVLSTIKPVASSDNKVNVSVSREKILTIFQN
YPIVKKAYDDNVPKNFKEQEFWARFFSSKLFRKLRGERIMQNDRGDMIIDRYLTLDQEFD
RRDDEMLLHPVKKIIDLEGNLNDDPEKRGNRPHFTMLPGTDPNGNNDGAVDILKGMNRLS
EKMIKSLENEYSRVNLQLEDLDKEEREEILFSDLEEAEKTDYKEIYLRKRTPADRSNGGA
SDFASSNNWDEIKGKIESITSELQGTLDLTAVSNVNAKTNQKINRRVLKAVKINAKQARH
LHFDSTIGAFLGNQANNGLEADSNLPSDLLESCRILHGTCCEFLKHFYIQFQSGEPKHGP
TVKKLYKYLKECTQKFQELLNSVSEQSDSRAEIVASCESYLQPVLFSVNLAVQKFDDAVK
ELESYNNTTSTPNVQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatagcggtgctgctgtattcaagaaggttagcgggatgctcactattgatgag
gaggcgagccctgcagttctgacgtggaggtctacagatggggataaatcacatactgtc
ctccttaatacaattaacaaattccaagcgacgccagcaagtagtgacaagatgatgttg
aggttagttgctaaggttgatgaaaccaagaagattaaagatagcgagggaaatgaagtg
cctcccaagcctgttgtgcataagttttcatttaataataggattgtgatggataatatc
aaagaaacattacagcatattattgcacggtataaagatgaggatgtatttgaagaaaag
aagcgaaaggaggaattttatgcaccggtaacctctcaagaggattcattaatcaacact
acttcattggatgattctttatcacaagagaagcttttaacaaacttgaagttgcaacaa
tctttgttaagggaaaatagaaacctaatgaaaacttttcaggaagctgttattaaggca
gggcttcctccgcaggagttttggtctacgagaattccgctgcttcgagcatttgcattg
acaacttcacaaaagataggtccatataatgttctttctaccatcaagcctgttgcatcg
tcggataacaaagttaatgttagtgtttccagagagaagattctcaccatatttcagaat
tatccgattgtaaaaaaggcatatgatgataatgtacccaaaaacttcaaggaacaagaa
ttttgggctcgattcttttcttcaaagcttttccgtaagttgagaggcgaaaggataatg
cagaacgatagaggtgatatgattattgatcgttatttgactcttgatcaggaatttgat
cgtcgtgatgatgagatgcttctacacccagttaagaagataatagatttggaaggaaat
ctaaacgatgatcccgaaaaacgtggtaataggcctcatttcactatgctgccaggtact
gatcccaatggaaataatgatggtgccgttgatatattgaaaggaatgaacaggttaagt
gaaaaaatgattaaatcattagaaaatgaatattcaagggtgaatttacaattagaagat
ttggataaggaagaaagggaagaaatattatttagcgatttagaagaggctgaaaagact
gattataaggaaatatatttaagaaaaagaactccggcggatagatctaatggcggagct
tcagattttgcttcatcaaataattgggatgaaatcaaaggcaagattgagtctataaca
tctgaacttcaaggtactctggacctgacggctgtcagtaacgtgaatgcaaaaaccaat
cagaaaatcaacaggcgagttttgaaagccgtgaagattaatgctaaacaagcaaggcac
ttgcattttgactctactataggtgcatttttaggtaaccaggccaacaacggcctagaa
gccgactctaacttaccatcagatttgctagaaagctgccgtatattacacggcacttgt
tgcgaatttttaaagcatttctatattcaatttcaaagtggtgagccaaaacatggtccc
accgttaaaaagctctacaaatacttaaaggaatgcactcaaaagtttcaagaacttttg
aactctgtgagtgaacaatcagattctagagctgaaattgtagcatcttgtgaatcatac
ctacaacctgttcttttctcagtgaacctcgcagtgcagaaatttgatgatgctgtaaaa
gagctggagtcttataacaatacaactagtacccccaacgtacaataa
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