Eremothecium cymbalariae: Ecym_4037
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Entry
Ecym_4037 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Ecym_4037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
erc03041
]
Ecym_4037
Enzymes [BR:
erc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Ecym_4037
Spliceosome [BR:
erc03041
]
Complex C
Other components
Step II factors
Ecym_4037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
Cas3-like_C_2
Flavi_DEAD
HA2_N
PhoH
ATPase
SLFN-g3_helicase
T2SSE
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
11469232
NCBI-ProteinID:
XP_003645936
UniProt:
G8JSW6
LinkDB
All DBs
Position
4:complement(82812..86084)
Genome browser
AA seq
1090 aa
AA seq
DB search
MVSDLQKLIQDNTESKVTERFVETIKSIAKIHSRDEKKFVKTCNALGKFKGKEDFLKELL
QRINGSEVASDLVVGAGTKEKEDSIHRSGASVANKARTKKAISLSFYESDEEHDFLPEVT
PIAKPLSGIKEVAFKRITKNAATQLKEYPEHTKHNTKRRDMVQYPERSDFVEVPTLDSTV
DEEQMKQLRSTALPEDELPFTHDIESTTAENIAEDRDWYNDEEAVGHVIPVANIPDEGTK
RPSRVNMEYDSEVRLTAISFNERKNLIPPFLRSYNNIIGETVIIGSLDSDPLSKGGLINP
FKNPDSEFSINARRGSKIVATRKLQRDRKVHSAQTANIVGTVVGKVLGIKKETKEDQKAD
EEVVSQSYAEIEEVRKSLPAYSVKSELLQVIRDNQVTVIIGETGSGKTTQLGQYLYEDGF
SNSSRMIGITQPRRVAAISVAQRVALEMNVKLGKEVGYAIRFEDKTSADTRIKFMTDGIL
LREALLNDTLDNYSCIILDEAHERSLNTDILLGILKNLLLVRRDLKLIITSATMNANKFS
KFFGCAPQFTIPGRTFPVQVNYTRAPVSDYVEAAVIQAIDIHLSSPASSGDILIFMTGQE
DIETTCEYLTEKLIEIRVKRKLVEVDPLRDIEVLPIYSSLPADIQGKVFKKAKSNKRKIV
VATNIAETSLTVDGIKYVIDCGYSKLKVYNPRIGLESLAITPISLANANQRSGRAGRTGP
GIAYRLYTEHSAVEDMYEQTIPEIQRTNLASSLLLLKSLGIHDLLAFPFMDRPPVLTLMK
SLFELWSLEALDNFGNLTTLATKMAKFPLQPSLSKILLLSAKCGCSEEMLIIVSMLSVPQ
VFYRPRERQNESDQARSRFLIPESDHLTLLNVFAQWKANRFSADWCNKHYLQYRSLRRAY
DIKEQLASVMKKERVPIISSGADWDIIRKCICAGYTSQAARKSGLSQYNHLKNAMELKLH
PTSSLFASGDPPPYVVYHELLVTSKEYINVVTAVDPFWLMEYGGIFYNIRRVSKQEVYGL
YEHDERDIDRKPDDLDKKINACYQSKKVFLDNLRKDTEKSSNLKESQDIKKRDSQGDSSV
RIGFKKRKPL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagatctacagaaattgatccaagacaatacagaatcaaaggttaccgaaagg
tttgtagaaacgattaagagtatagccaaaattcatagcagagatgagaaaaagttcgtc
aagacatgcaacgccttagggaagttcaagggcaaagaggactttttgaaagagcttctc
caacgcatcaatggatctgaagtagcatctgatctagttgtaggtgcgggtacgaaggaa
aaggaagatagtattcatcggtcgggtgcctcagttgctaacaaggctagaacgaaaaag
gcgatatctttgagcttttatgagagcgatgaagaacacgactttttaccagaagtcaca
ccaattgccaaacctttatctggaattaaggaagtcgcctttaagagaataacaaaaaat
gctgcaactcagctgaaggagtatcctgagcacacaaaacacaacaccaaaaggagggat
atggtgcaatacccagaaagatctgattttgttgaggtaccgacattggattctactgtt
gacgaagagcagatgaaacaattaagatccacagcattacctgaggatgagttgcccttt
acgcacgatatagaatctaccacggcagagaacattgctgaagatagagattggtacaac
gatgaggaagcggttgggcacgttattccggttgcgaatatcccggacgaaggcacgaag
aggccgtctagggttaacatggaatacgattctgaagttcgtcttacagctatttctttt
aatgagcgcaagaatctcataccgccttttcttagaagttacaataatatcattggcgaa
acggtgataattggctcattggatagcgatcctctttcaaaaggaggattgataaatcct
tttaaaaatccagatagtgagttttccatcaacgccagaagggggagcaaaatagtcgct
acgaggaagcttcaacgtgatcgtaaagttcattctgcgcagacagcaaatattgtgggg
accgtggttggtaaggtattaggtattaagaaagagaccaaagaagaccagaaagctgat
gaagaagttgtgagtcagtcttatgcggagattgaagaggtacgtaaatcgttacccgct
tacagcgttaaatctgagttattacaggtaatacgtgacaaccaagttaccgtaatcatt
ggtgaaacaggctctggtaaaaccacacaactgggccaatatctctacgaagacggattc
tctaattcaagtagaatgataggcattacacaaccgcgccgtgttgccgctatatctgtc
gcacagcgtgtggccttggaaatgaatgttaagctcggtaaagaagttgggtatgctatt
aggtttgaggacaaaacttctgcagatactcgaataaagtttatgactgatggtatttta
ctgcgtgaagcattattgaacgatacattggataactattcatgcataatattagatgaa
gcacatgaacgatctttaaacacagatatattgcttggcattcttaaaaatttactattg
gtaaggagggatttaaagcttataattacatcagcaacaatgaatgcaaataaattctca
aagttcttcggttgtgctcctcaatttactataccaggaagaacatttcctgtacaagtc
aactatacaagagctccagtaagcgactatgttgaagcagctgtaattcaagctattgat
atacatttgtcctctccagcttccagtggtgatattttgatatttatgaccggacaggag
gacattgagaccacatgtgaatatttaacggagaaattaatcgaaattcgtgttaaacgc
aaacttgttgaagtggatccattgcgtgacatcgaagtgttgccaatttattcatcattg
ccagcggatattcaaggtaaggtattcaagaaggccaagtcaaacaagcggaagatagtt
gtagctacgaatattgctgaaacatctttgacagttgacggtattaaatatgtaattgat
tgtgggtattctaagttgaaggtatacaatcccagaattggcttggaaagtttggctatc
acacccatttcgctagctaatgcaaaccagagatcaggacgtgcaggacgaactggacca
ggtatcgcttatcggctgtacacagaacactcagctgttgaagatatgtacgaacaaact
ataccagaaattcagagaacaaatttggccagttcattattgctactgaagtctttgggt
attcatgacctgcttgcattcccctttatggacagacctccagtgctaactttgatgaaa
tcactatttgagctatggtcactggaggcacttgataattttggaaatttgacaactttg
gctacaaaaatggctaagtttccattacaaccatccttatcaaaaatacttctcttatct
gcaaagtgcggttgtagtgaagagatgctcataattgtttcaatgttatctgtaccacaa
gtattttacagaccaagagagagacaaaatgagtcagaccaggcaagatcaaggtttttg
attcctgaatcagaccacttaacgttactgaatgtcttcgcacaatggaaagccaatcgc
ttctctgcagattggtgtaacaaacattatttacaataccgttcattgagaagagcatat
gatattaaagaacagctagctagcgtcatgaaaaaggagagagtaccaataatttcctca
ggagcagattgggatatcataagaaaatgtatttgtgcaggatatacaagtcaagctgcc
cgaaaatcaggactgagccaatataatcatctaaaaaatgccatggaattaaaattacac
cctacaagttctttgtttgcctcgggtgatccaccgccatatgtcgtgtatcatgaactt
ttagtaacaagtaaagaatacattaacgtggtcaccgcagttgatccattttggttgatg
gaatatggtggaatattttacaatattaggagagtctcaaagcaagaagtttatggttta
tacgaacatgatgaaagagatattgacagaaaaccagatgatttggataaaaagattaat
gcttgctatcagtcaaaaaaggtttttcttgacaaccttcggaaggatactgaaaaatca
tctaatttaaaggagtcccaggatattaagaagagggacagccagggggactcttcagta
cgtattggtttcaaaaagaggaagccgctgtaa
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integrated database retrieval system
