Eremothecium cymbalariae: Ecym_4134
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Entry
Ecym_4134 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
erc
Eremothecium cymbalariae
Pathway
erc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ecym_4134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
erc03009
]
Ecym_4134
Ribosome biogenesis [BR:
erc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
Ecym_4134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Utp13
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_Nup120_160
WD40_like
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
WDR54
PAN2_N
Beta-prop_VPS8
Beta-prop_NOL10_N
CPSF_A
Utp12
Motif
Other DBs
NCBI-GeneID:
11472425
NCBI-ProteinID:
XP_003646030
UniProt:
G8JT60
LinkDB
All DBs
Position
4:complement(280146..282578)
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AA seq
810 aa
AA seq
DB search
MDFKTTFFNTTLAPFYAGSGTAVSITNDGSLLATSVLDVINIVQLKERHEIVHKINNDDE
QEITALKLTPDGSYLCFVAQNQLLRIYSLASKKIVRSMKVSSPVYVMDCDETSTLLVIGG
TDGSVSIFDIENGYVTHSFKGHGGIISSVKFYGELDGANWLLASGDTNGVVKIWDLVKRR
CMHTIQEHTAAVRGLDFCVKDSEMLLISGGRDEIINLHHFDYKKTCKLLKTLPVKQQIEA
CGFIANHESLIYHAGDNAVYQIVCLQSGKQIKSSQKPQEELFIIGVLSIENGSKHYLVLS
DQTLFLLDIEQALMEEDTTIPIKSKIAGNHGTIADMKFVGPNLDMLALATNSPTLRIIKA
PQASEEDGQFPVETNMYGGHVDLLNALDASEDGLWIATASKDHTVLLWRYSEQLGDFKQY
AKFIGHAGSVTAVALPNIMDQHFPNFLLSSSTDMTVKKWKVPKPTQNPTEDEIPVVKTSE
YTRRAHEKDINALSISPNDSIFATASYDKTCKIWDLVTGELVATLANHKRGLWDVSFCQH
DKLIATCSGDKTIKIWSLENYNIKATLEGHTNAVQRISFINKNKQLVSCGADGLVKIWDC
STGECLRTLDAHDNRIWALEVADDGDRFVTADADGLFQFWKDNSEEEHEQDLEKKRLKVE
QEQSLQNYLSKGDWVNAFLLAMTLDHPMRLYNVLKSSISGRDETKESDDNHVFSAELDHI
IGTLDDEQLLRLLKRCRDWNTNAKTYTVAQLVIKCIMREHNIVQLSEIPGVVQVIDALIP
YTERHYSRVDSLVEQSYILDYALMEMDKIL
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaacaacattttttaatacaacacttgccccattctatgcaggtagcggc
acggctgtctccattaccaacgatggttcattattggctacatcagttttagatgtgatc
aatattgttcaacttaaagaacgtcatgaaattgtgcataagattaataatgacgatgaa
caggagataactgccttaaaattgactccagatggttcatatttatgttttgttgcccag
aatcaattgttgagaatttacagtttggcttcgaaaaaaattgttaggtctatgaaagta
tcttctccagtatatgtcatggattgtgatgaaacatcaacacttttagtaatcggtggt
actgacggcagtgttagtattttcgatattgaaaatgggtacgttactcattcttttaaa
gggcatggtggaattatctctagtgtgaagttttatggtgaattggacggtgcaaattgg
ttgcttgcttcaggtgataccaacggtgtagtaaaaatctgggacttggtaaagcggaga
tgtatgcatacaatccaagaacatacggctgcagtgagaggtttggatttctgtgtgaag
gattcagaaatgctactaatatctggtggtagagatgaaattatcaacttacaccacttt
gattataagaaaacttgtaaactattaaaaaccctacctgttaagcagcagatcgaggca
tgtgggttcatcgctaaccatgaaagtctaatatatcatgcgggtgacaatgcagtatat
caaattgtttgcttgcagtctggaaaacaaataaagagttcacagaaaccccaagaggaa
ttgtttattattggtgtcttgtcaattgaaaatggttcaaagcattatttagtgttatca
gatcaaaccttatttttgttagatatcgaacaggcattgatggaagaagatacaaccatt
ccaattaaatctaaaatcgctggtaaccatggaactatagccgatatgaaattcgtaggt
cccaatttagatatgctggctctagcgacgaattcgcccacattgagaataatcaaagct
ccacaagcctctgaagaagatggtcaattcccggttgagacaaacatgtatggggggcat
gttgatttactaaatgctttagacgcttccgaagatggtttatggattgcaaccgcgtcg
aaggatcacactgtcctgttatggagatatagtgaacaactcggtgacttcaagcaatat
gcaaaatttatcggacacgcaggttcagttacagctgttgccttacctaatatcatggat
caacattttcctaactttttgctcagttcctctacagatatgactgttaaaaagtggaaa
gttccaaaaccaacccaaaatccaacagaagatgaaataccagtggtcaaaacaagtgag
tatactaggagggcacacgaaaaagatataaatgcattaagtatctctccaaacgattcc
atatttgcgaccgcttcctacgacaaaacttgcaaaatttgggatctagttactggagaa
ttagtggctacgttggcaaatcacaaacgtggtttgtgggatgtttcattctgtcagcat
gacaagctaattgcaacttgttccggcgataagactattaaaatttggtccttagaaaat
tataacattaaagcaacgttagaaggccataccaacgctgtacagcgtatttcattcatc
aataagaacaaacagcttgttagttgtggtgcagatgggctagtgaaaatctgggactgt
agcactggtgaatgtcttagaactttagacgctcatgataatagaatatgggcattggag
gttgcagatgatggtgacaggtttgtgacagcagatgcggatggtctgttccaattttgg
aaggataatagtgaagaagagcatgaacaggatttggaaaagaagagactaaaagttgag
caagaacaatcattacaaaattatttatccaaaggagattgggtaaatgcattcttgttg
gcaatgaccttggatcatcccatgcgactatataatgtattaaaaagtagcatctctggt
agagatgagactaaagaaagtgatgataatcacgtctttagcgcagaattagaccacatc
attggcaccttggatgacgagcaacttttaaggctgctcaagaggtgcagagattggaat
acaaatgcaaaaacctacacagttgctcagttggtaatcaagtgtattatgagagagcat
aatatcgttcaactgagtgagattcccggcgtagttcaagtaatcgatgccctgatcccg
tacaccgaaagacattattctagagttgattcattggtagaacagagttatatcttggat
tatgctctaatggagatggataaaatactgtaa
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