Eremothecium cymbalariae: Ecym_4436
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Entry
Ecym_4436 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K14308
nuclear pore complex protein Nup54
Organism
erc
Eremothecium cymbalariae
Pathway
erc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Ecym_4436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_4436
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
Ecym_4436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
EOS1
RR_TM4-6
Motif
Other DBs
NCBI-GeneID:
11471591
NCBI-ProteinID:
XP_003646299
UniProt:
G8JTX9
LinkDB
All DBs
Position
4:899222..901012
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AA seq
596 aa
AA seq
DB search
MFNFGGNTAATSGSATSGAGLFGAKPAAGGFSFGSNSNASQNTGGGLFSNPSNTTGVQGN
TGGGLFGSMQNTQTGTNGVSLFGSGSTTQTGTGGGLFGQSNNNQNNSAIGGVPAAQGQQG
NMVGGAVGAGIGVGGGGGGGGALFGQSSNPSQNPPSLTGLFNSHPNSGTSTLNQNSAVGG
MNNGLFGSNIGSNNNNSNSGTLFGQNNAPSNTGTGLFGQNTISAQTGGGMFGQNNASMQQ
PQQQSSGLFGSTALSNTQPSFAWSQQQPSNQSVNNNQQQQQQQQQQQQQEQQQQQQQQQQ
QQQQQQQQQQQQLQFQTQMQMQMLHSNYPQQIQEQILKCRDSWDPSSQRSKLRTFVYNKC
NETEAMLYTKPSNVTQEDWDKALTNKPNANVIPVEVKGFEDINQRHNLQRDHVAQARIIL
SQILEKLTNVSQKHELDTAARILKAQARNSKIQHRIMRLATQIAVLKNKGLPLSVQEETL
VSEFRKLLDRSNDPSGLGKNNELWARLAVLKERVRTLSNQLDSTLVVIAENGGGKTTSYG
SIDDHHIDGDERRVDEEVSSRVNKIADILANQQRGLIYLNDVLDKDMQSVDKYFKK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatttcgggggtaatactgctgctacttctggttctgccacttcgggtgctggt
ttatttggcgccaagcctgcagcaggtggttttagttttggtagcaattccaatgcgtct
caaaatactggtggtggtttattttctaatccatctaatacaacaggcgttcagggcaat
acaggtggtgggttatttgggagtatgcaaaatactcaaacgggtacgaatggagtgagt
ttgtttggtagcggttctacaacgcaaacggggacaggtggtggtttatttggacagagt
aacaataaccagaataattcggcaattgggggtgttccagctgctcagggacagcaaggt
aatatggtgggtggagctgtaggtgctggtattggtgttggtggcggtggtggtggcggt
ggtgcattgtttggacaatcttctaatccatctcaaaatcccccttctctaacagggttg
tttaatagtcatccaaatagcggtacaagcaccctcaaccaaaattctgccgttggtggc
atgaataatggattatttgggtctaacattggttcaaacaacaataattctaactcggga
acgttatttggccagaataatgctccttccaatactgggactggtttgtttggccagaac
accatatctgcacaaacaggtggaggtatgtttggccaaaataacgcatctatgcaacag
ccgcagcaacaatcctcagggttgtttggctcaacagcactgagtaacacgcagccatca
tttgcgtggtcccagcagcagccttcaaatcagtctgtgaataacaaccaacagcaacag
cagcaacagcaacagcaacagcaacaggagcaacagcaacaacaacagcaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaactacagtttcaaacgcagatgcaa
atgcagatgctgcattcaaactacccccaacagattcaagaacaaatattaaagtgcaga
gattcatgggacccaagtagccaaagatctaaattgagaacttttgtttataacaagtgt
aatgagaccgaagcgatgctgtataccaaaccgtcaaatgtaacacaggaagattgggat
aaagcgcttacgaacaagcctaatgcgaatgtgattcctgttgaggtcaagggctttgaa
gatataaaccagcgccacaaccttcagagggatcatgtcgcccaagcacgaatcattctt
tcacagatcttagaaaagttgaccaatgtttcccaaaagcacgaattggacactgccgca
agaatcctcaaagcccaagcacggaactccaaaatccaacatcgtattatgagactggct
acacaaattgctgtcctgaaaaataaaggcctaccattgagcgtgcaagaagaaacattg
gtatctgaatttagaaaactcttggatcgcagcaatgacccatcagggttaggcaaaaac
aacgagctatgggcccgtctagctgtactcaaagaacgtgtcagaactctcagcaaccaa
cttgatagcaccttagttgtcattgcagaaaatggtggcggcaaaacaacctcttatggg
tcgatcgacgatcaccacatcgacggagacgaaagacgtgttgatgaagaagtctctagt
cgtgtaaacaaaattgctgacatcctagccaaccaacaacgcggcttgatttacttgaat
gacgttctagacaaagacatgcaaagtgtcgataaatacttcaaaaaataa
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