Eremothecium cymbalariae: Ecym_4646
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Entry
Ecym_4646 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_4646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_4646
03036 Chromosome and associated proteins [BR:
erc03036
]
Ecym_4646
Enzymes [BR:
erc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ecym_4646
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Ecym_4646
mRNA degradation factors
5'-3' decay
Decapping complex
Ecym_4646
Chromosome and associated proteins [BR:
erc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Ecym_4646
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
11470192
NCBI-ProteinID:
XP_003646486
UniProt:
G8JSE7
LinkDB
All DBs
Position
4:complement(1259564..1261036)
Genome browser
AA seq
490 aa
AA seq
DB search
MSEDDWKKNLNIPKKDTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEA
IPIALTRRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVPTRELALQTSQVVRT
LGKHCGLSCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFIMDE
ADKMLSRDFKSLIEQILSFLPSSHQSLLFSATFPLTVKEFMVKHLNKPYEINLMDELTLK
GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR
MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR
FGHLGLAINLINWNDRFNLYKIEQELGTEIASIPTQIDKALYVADDTTAVPLPFPLDTVQ
GASEQHLQRTLPLHNPAQVNGIPQQQLPSQIQQQPFNPAFQQAQPPQQLFPTQIYQQGVQ
PQQFAQMPQY
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagacgattggaaaaaaaatttgaacatacctaagaaggataccaggcctcag
acagatgatgttttgaatactaaggggaatacgtttgaggatttttacttaaagcgagaa
ttgttgatgggtatctttgaagctggatttgagaaaccatctccgattcaggaagaggcg
attccaattgcgttaacgaggagggatattttggcgagggccaagaatggtactggtaag
acggctgcgtttgttattcctactttggagattgtgaagcctaaggtgaacaagattcag
gcgttgataatggttccgacaagggaattggcgttgcaaacgtcgcaggtggtgaggaca
cttgggaagcattgtgggctttcatgtatggttaccacgggcggtacgaacttgagggat
gatattatgaggttaaacgagccggtacacgttcttgttggtactccaggtagggtattg
gatttagcgtctaggaaggttgcggatctaagcgagtgttctctttttattatggatgag
gcagacaagatgttaagtcgtgattttaagtctttaattgaacagattttgtcgtttcta
ccttccagtcaccagtctctcttgtttagtgccacgtttccgcttacagtgaaggaattt
atggtgaagcatttgaataaaccttacgagatcaatctaatggacgagttaactttgaag
ggtattacgcagtattatgcatttgtagaagaaaggcaaaaactgcattgtttgaacact
ttgtttagcaaattgcagatcaatcaggctattatcttttgtaattctacgaatagggtg
gagctattagcgaagaaaattacggatctcggttactcatgttattactctcatgcaaga
atgaaacaacaagaaaggaacaaagtcttccatgaattccgtcaaggaaaagttcgtact
ttagtttgttcggacttattaactcgtggtatcgacatccaagctgtcaatgttgttatc
aattttgatttcccaaaaaccgccgagacttacttacatcgtattggtagatccgggaga
tttggtcacttgggtttagccattaatttaattaactggaatgatcgtttcaatctatac
aagattgaacaggaattgggaacggagattgcatcaattcctacgcaaattgataaggcg
ttgtatgttgcagatgataccactgctgtaccactgcctttccctctagatacagtacaa
ggtgcaagtgagcagcatctacaacggactcttcctctacataacccagcacaagttaat
gggataccccaacagcagttgccttcgcagatacaacaacaaccattcaacccagctttt
caacaggcccaaccgcctcagcagctatttccaactcagatatatcagcaaggtgttcaa
cctcagcaatttgctcaaatgccacaatattga
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