Eremothecium cymbalariae: Ecym_5215
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Entry
Ecym_5215 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
erc
Eremothecium cymbalariae
Pathway
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_5215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_5215
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Ecym_5215
mRNA degradation factors
5'-3' decay
Lsm complex
Ecym_5215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
11468304
NCBI-ProteinID:
XP_003646801
UniProt:
I6ND42
LinkDB
All DBs
Position
5:complement(459349..459807)
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AA seq
152 aa
AA seq
DB search
MSQSKISEGEADLYLDQYNFTTTAAIVGSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQ
HCVERIYITEENQYAECERGVFMVRGENVVMLGEIDIDKEDKPLELMEKVPFEDAQRFKD
RYNEEKFKIETQKTKELARFGLINDFHKSDMY
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaagcaagatatcagagggcgaagcagacttgtacttggaccagtacaacttc
actacaacagctgcaattgttgggtctgtagatagaaagatatttgttcttttacgtgat
ggtaggatgttgtttggagtccttagaacatttgaccagtatgcgaatttgattctccag
cactgtgttgaaagaatatacattactgaggaaaatcagtatgctgaatgtgagcgtggc
gttttcatggttcgtggcgaaaatgtggttatgttaggagagattgatatcgataaggaa
gataaacctttggagttaatggaaaaggttccctttgaggatgcgcagaggttcaaggat
cggtacaacgaggaaaagttcaagatagagactcagaaaactaaagaattggcgaggttt
gggttaattaatgatttccacaaatcggatatgtattag
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