Eremothecium cymbalariae: Ecym_6049
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Entry
Ecym_6049 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03013
Nucleocytoplasmic transport
erc03015
mRNA surveillance pathway
erc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Ecym_6049
09122 Translation
03013 Nucleocytoplasmic transport
Ecym_6049
03015 mRNA surveillance pathway
Ecym_6049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_6049
03041 Spliceosome [BR:
erc03041
]
Ecym_6049
Enzymes [BR:
erc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ecym_6049
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Ecym_6049
Spliceosome [BR:
erc03041
]
Complex C
Other components
EJC/TREX
Ecym_6049
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Ecym_6049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
11468797
NCBI-ProteinID:
XP_003647269
UniProt:
G8JUX3
LinkDB
All DBs
Position
6:94618..95934
Genome browser
AA seq
438 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQEIQVENTKSAEAVGGVEESGEGKDTDKKGSYVGIHSTGFKDFL
LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVA
GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDIELLKNKETAPHIV
VATPGRLKALVRDNNIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA
TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQ
VIIFVKSTLRANELTKLLNASNFPAITVHGHMKQEKRIARYKAFKEFEKRICVSTDVFGR
GIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKEDEEILAKIQERFDV
KITEFPEEGVDPSTYLNT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgaaggtgaagaggacttattggaatactctgacaacgaacaagaaatccaa
gtagaaaataccaagtcagctgaggcagtaggtggtgtagaagaatcaggagaaggtaaa
gacacggataaaaagggttcctatgttggtattcattctactggtttcaaggactttttg
ttgaagcccgaactatctagagcgattattgactgtggttttgagcatccttcagaagtg
cagcaacacacgattccgcagtctattcatggtacagatgtcctgtgtcaagcgaaatct
ggtttaggtaagacagcagtgtttgtattgtctactctgcagcaattggatcctgtggct
ggagaggtgtcagtagttgtgttgtgtaacgcgagagaattggcgtaccagattagaaat
gagtacttaagattttcaaaatatatgccagatgttaagacagctgtattttatggtggt
actgatacccggaaggacattgagttgttgaagaacaaggaaacggcgccacatattgtt
gttgcgacgcctggacgtttgaaggcattagtcagggacaacaatattgatctatctcat
gtcaaaaacttcgttattgatgaatgtgacaaagttttggaggaattggatatgagaaga
gacgttcaggatatttttagggccacccctagagataaacaggtaatgatgttctctgct
accttgtcccaagagatcagaccgatctgcaggcgtttcctacaaaacccgcttgagata
ttcgtggatgatgaagctaaattgactttacatggattgcaacagtattacatcaaactt
gaagaacgtgagaaaaaccggaaattagcccaattgttggatgaccttgaattcaaccaa
gtcattatattcgtcaaatccaccttgcgtgcaaacgaactaaccaagttgttgaacgca
tcaaattttcctgcaatcactgtgcatggtcatatgaagcaggaaaagcgtattgcacgt
tataaagccttcaaagaattcgagaaacgtatttgtgtctccaccgatgtgtttggcaga
ggcatcgacattgaacgtatcaacctggccatcaattacgatatgccaagtgaggcggac
cagtacttacaccgtgtcggcagagcaggtagattcggtacgaagggtttggctatttct
ttggtgtcctcaaaggaagatgaggagatcttagcgaagatccaagaacgttttgatgtc
aagatcactgagtttccagaagagggtgttgatccatctacttacttgaacacttga
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