Eremothecium cymbalariae: Ecym_6303
Help
Entry
Ecym_6303 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_6303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_6303
03041 Spliceosome [BR:
erc03041
]
Ecym_6303
03009 Ribosome biogenesis [BR:
erc03009
]
Ecym_6303
03016 Transfer RNA biogenesis [BR:
erc03016
]
Ecym_6303
Enzymes [BR:
erc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Ecym_6303
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Ecym_6303
Spliceosome [BR:
erc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Ecym_6303
Complex C
U4/U6.U5 tri-SnRNP related factors
Ecym_6303
Ribosome biogenesis [BR:
erc03009
]
Eukaryotic type
Pre-60S particles
Helicases
Ecym_6303
Transfer RNA biogenesis [BR:
erc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Ecym_6303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Death_3
nSTAND3
DUF6985
YodE
AAA_22
Helicase_dom4_arc
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
11469063
NCBI-ProteinID:
XP_003647500
UniProt:
G8JUA3
LinkDB
All DBs
Position
6:570968..574195
Genome browser
AA seq
1075 aa
AA seq
DB search
MDEDLFGVFVEAPAEIPDALVEDIGAEEQELSDAKTNKRSLSEDGTGNNEPSTDSGMESM
HKKVKKDKKLIYDKKKSDVVPVLADSFEKEASREVEASLGLGNANTMLVDENGKMKLRHQ
VRHQVALPPKYDYRPIGEHKRVNEARTYPFNLDPFQDTAISCIDRGESVLVSAHTSAGKT
VVAEYAIAKSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMT
TEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN
AMEFAEWICKIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGAFREENFQKAMA
SISSQTGDDPNSVNSKGGKGQTFKGGAAKGDSKGDIYKIVKMIWKKKYNPVIVFSFSKRD
CEELALKMSKLDFNSDDEKDSLAKIFKNAIDLLPETDRELPQIKHLLPLLKRGIGIHHSG
LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGEYI
QMSGRAGRRGLDDRGVVIMMLDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG
ISPEFMLEHSFYQFQNITSVPVMERKLIELTSRLEVIEIDDEKNVKDYYDVRQTLDEYNE
DVRKIIAHPSNILSFLQPGRLIRVKVNEKGDYGWAAVVNFAKRVNKRDPSVVYADHQSYI
VNVIVNTMFADAPINLLKPFNPVLPEGIRPAVEGEKSISTMLPIVLDSIQTLGNLRIFMP
SDIKADSQKEVVGKTLKEVQRRFPKGIPLIDPIKHMKIEDEDFLKLLNKIEILETNMNSN
PIANSAKLRQLYEKYCEKVAIEGDIKQLKFKINEAQAVIQLDDLRRRKRVLRRLGFCTSS
DIIELKGRVACEISSGDELLLTELILNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPE
LAEPLKAMREVASKIAKIVKDSKIEIVEKDYVESFRHELMEVVYEWCKGATFTQICKMTD
VYEGSLIRMFKRLEELIKELIDVSNTIGNSALKEKMEAALSMIHRDIVSAGSLYL
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatttatttggagtgtttgtagaggctccagcagaaattccagatgcgtta
gtggaagatataggtgccgaagagcaagagttatcggatgcaaagactaataaacgtagt
ctatcggaggatggcacaggtaataatgaacctagtactgatagcgggatggaatcaatg
cataaaaaggtgaagaaggacaagaaattgatttacgataaaaaaaagtcagatgtcgtg
cctgttctagcagattcttttgagaaggaagcttctagagaagttgaagcttctttaggg
ttgggtaatgccaatactatgttagttgatgagaatggtaaaatgaaattgaggcatcag
gttaggcatcaagttgctcttccaccaaaatatgactataggccaattggggagcacaaa
agagtgaatgaggcgcgtacttatccatttaacttggatccttttcaagatactgctatt
tcctgtattgatagaggggaatctgttttagtttctgcacacacttctgcaggtaagaca
gttgtcgcagaatatgcgattgcgaaatctctgagagagaaacaaagagtaatttataca
tctccaatcaaggctttatcaaaccagaaatatagagaactattggctgaatttggtgat
gttgggttaatgactggtgatataacaattaatcctgatgcaggatgtttagttatgacc
actgaaattctaagaagtatgttatatagaggaagtgaagttatgagagaagttgcctgg
gttgtttttgatgaagtccattacatgagagataaagaaagaggtgttgtctgggaagag
actattattttactcccagataaggttcggtatgtgtttctgtctgctaccattccaaat
gcaatggaatttgctgagtggatatgtaaaattcattcgcaaccatgtcatattgtttat
actgatttccgtcctactcccttacagcattatttatttccagcccatggggatggtatt
catctagtggttgatgaaaagggtgcctttagggaggaaaattttcaaaaagctatggca
tctataagtagccaaactggtgatgatccaaattctgtgaactcaaagggaggtaaaggt
cagacatttaaaggtggagctgctaagggagattcaaagggggacatttacaagattgtt
aaaatgatttggaaaaagaagtataatccagtaatcgttttttcgttcagtaaacgtgat
tgtgaggagttagccttaaaaatgtcgaagctagactttaattctgacgacgaaaaggat
tctttagctaaaatctttaaaaacgcgattgacttattaccagaaactgaccgcgagctg
cctcagattaagcacttattaccgttactaaagagaggtattggtatccatcattcaggt
ttgcttcctatattaaaggaagttattgaaatcctatttcaagaaggtttcttgaaagtt
ttatttgcaactgaaaccttttctattggattgaatatgcctgccaaaacagtagtattt
accagtgtcaggaagtgggatgggaagcagtttagatgggtgtcaggtggtgagtatatc
cagatgtctggtcgtgccggtcgtcgtgggttggatgatcgtggtgttgtcattatgatg
ttagatgagaagatggagccacaagtagctaaagggatggtcaaaggtcaagctgatcga
ttagattcagcattccacttaggttacaatatgattttgaatttgatgagagttgagggt
atatctccagaatttatgttggaacattccttttaccaatttcaaaatattacatccgta
ccagtcatggaaagaaagcttattgaattgacttctcgcctggaagtaattgaaattgat
gacgaaaagaatgttaaagactattatgatgtcagacaaacattggatgaatataatgaa
gacgtcaggaaaatcatagcccatccatccaatattctaagctttctgcaaccgggtaga
ttaatcagagttaaagttaatgaaaagggagattatggttgggctgcggtggtaaatttt
gctaaaagagtaaataaaagggatccatctgttgtatacgctgatcatcaatcctacatc
gttaatgttattgtgaacaccatgtttgctgatgctccaataaatcttctcaaacccttt
aatccagtcttaccagaaggtattcgaccagcagtggagggggaaaaatcaatctctaca
atgcttccaatagtcttggattctattcagactttaggaaacctgagaatatttatgcca
agcgatataaaagctgacagtcaaaaagaagttgtaggtaaaacccttaaagaagtacaa
cgtaggtttccaaagggtataccattaattgacccaataaaacacatgaagattgaagat
gaggatttcttaaagttgctgaataaaatagaaatcttagagacgaacatgaattctaac
cctatagcgaattcggccaagttgcggcaattatacgagaaatattgtgaaaaagttgcc
attgaaggtgacataaaacagctgaagttcaagattaacgaggcgcaagcggttatccaa
ttagatgatttacgtcgccgtaaaagagttcttcgtcgtttgggcttctgtacatcctca
gacatcattgaactaaaaggtagagtagcctgtgagatttcatctggtgatgaattatta
ttgacggaattgattctgaatggtaacttcaatgaattaaaacctgagcaagcagcagca
ttgctatcctgttttgctttccaagaacgttgtaaggaggcccctagattaaaacctgaa
ttggctgagccgctgaaagccatgcgtgaagtggcctccaagattgcaaaaatcgttaaa
gattctaaaattgaaattgttgaaaaggattacgtggaaagtttccgccacgagttgatg
gaagttgtatatgagtggtgcaaaggtgccacatttactcagatatgcaaaatgacagat
gtctatgaaggctccttgattagaatgttcaaaaggctagaagagttaattaaggaattg
attgacgtctcgaacaccatcggtaactctgcgttgaaggaaaagatggaagcagcctta
agcatgatacacagggatattgtttccgccggttctttatatttgtaa
DBGET
integrated database retrieval system
