Eremothecium cymbalariae: Ecym_6378
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Entry
Ecym_6378 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
erc
Eremothecium cymbalariae
Pathway
erc03013
Nucleocytoplasmic transport
erc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Ecym_6378
09122 Translation
03013 Nucleocytoplasmic transport
Ecym_6378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_6378
03041 Spliceosome [BR:
erc03041
]
Ecym_6378
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
Ecym_6378
Spliceosome [BR:
erc03041
]
Complex C
Other components
EJC/TREX
Ecym_6378
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Ecym_6378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
11469140
NCBI-ProteinID:
XP_003647570
UniProt:
G8JUH3
LinkDB
All DBs
Position
6:738540..743309
Genome browser
AA seq
1589 aa
AA seq
DB search
MSIIGKLNSLAKEHTPFKRTIFTDEFLKDWQGNSSKLLERYDSIEESSEKDNLIYDIFNE
AMVFTNKEFKDLLNDDYGMLGEFLSKLCEKNSQANPRMLANIINYFPRSLEDDSNVIALI
GAIRGVDFEFSASLVEKLLTHRWTKEQTSLYKRNLISEKYHLKKYNLLFECAPGFSQICS
LLHVAYSDKDRFQSLKYYWNQMQFIAGKYTLDPIRVLDVVLRISSIYIHNHYDFLLDLLK
VSDYWPHEISDPFDWNKLNYGGNVVASRLIAYKLSNEKFDHKYMDMVCILIKEGFISYIS
IFEALRPDEETVQTYVEEYYADLEKQSSEGVLNPLAMAAALPDEDETSAPAANGEQKSDG
QVNVKKEKERQEQREEKERKNRHYRVKRTGKWRLVTSCLNHGLLFPALYSIKKNEKVALS
IDALVEACIRIFDYMIQPLYEQAINAPKCNAVSRVTMKMSNSGLPSKEPRLIHEYVSPNV
SERFLFNVKYSFYYTEWTDKLPVLHNIEDLFRYSHQILGLLGPRLSVSSSVITKLNSIAV
HDIESSNNSEDTIEMWINYFRKFIFPAIAAIEDDFVPNLSAYELMKRFPFEKRYFLYNEM
YTKTSNDNVFVRLAFNKVGKRIKTLLKSLSIDDIADKVNDVSRIVSSNPLAALGPIVNQI
ENYDKVSELVVISANKFPKIAYDILQYVLLLKLTSGRNLLQSDGINQNTWIQRLSVFIAG
LAKSCPEMDLTNILTFLVKSLHKNRNVSFPVLKELISKVGGIQNLNHVSSQQLQMLNSGP
SLQKVARSLILDTRQDTFEAARAITQVFVKLNAITELIVMLCNLNISNQSDDIHYKILST
KCDDSNSLLWTLIEMLKHTLSLEEFVSNVLPFYELVNDYNVPIEWSFHIWRDFFDEKIHE
GDESMKQIDEIIEKTEFKYVSFENLNKELFTNFWKLSLYDVQFNKALYDKTTSALNSKLN
AVKLQRERNSIMNDVQEVMSNCLAHQRAFKQIQELLQGNKEKWLPELNAETNQAFFQFCI
LPRTLFSSADAIYSALFIVELCGIQNSFSIFKFFVDSHILGGLLFSCTVTESANMGFFTN
VLLNTFEKARSEGVFDNCSLEEIYRLHSIMIGDLTGLLAESNYMSIRNSIEFLNQISHKF
PVVDEHIKELCHSLEYKLVGDNREDIRLPCNALIGHLKSRLKNASRKQDFYELPEEELLE
IRKLDEERMLIKKYQESLAQEDEAKKLEEESKMNILKPLDDRVESRYMANTGEADSTDAE
KTKQQSEAVSCQLHQILDNMDQVLNLLRTESAEEAPRFIRVVFFKNEFKKVINDYKGDLE
GFRKNIANILVDYFYSMVQWPQSNPTFVQKARDIKTACLKCNAPISKATKIKVMADDLYG
EDIASSWATNPKAARTNRESRFAGAKPVPNLTSDTSTSNENKWKTERVEKTAIDTRNTSR
YADEDTKSSTQTKKDDKPSGSRFNNGKVPVKKPVDNKQDQKPSNSLRNRVGSRFEGRQEN
STRFSGPRADPIRFPTAPARHAEPVNESRFRNMPKELSRKRAAEDYRYGDSKRQRQEDDN
RRKPTKETRGEQHPTAILSQKKGGFSRFR
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcattggaaagttaaatagtttagctaaagagcatactccttttaaaagaact
atattcacggatgagttcttgaaagattggcaaggcaattctagcaagcttctggagcga
tatgattcgatagaggagagttcggagaaagataatctcatctatgacatattcaatgag
gctatggtattcactaataaggaattcaaggatctacttaatgatgattatgggatgtta
ggagaatttttgtctaagttatgtgagaagaatagtcaggctaatccgcgtatgctggcc
aatatcataaattacttccctaggtctctagaagatgatagcaatgtcattgcgcttatt
ggagcgatacgtggcgttgattttgagttttctgctagtttagtagagaaactattaacc
cacagatggacaaaagaacaaacatcgttgtacaaacgaaatctcatatcagaaaaatac
cacttaaaaaagtataatctgttatttgaatgcgccccaggcttttctcagatatgttcg
ttgttacatgtggcatactctgataaagataggtttcaatctctgaaatattactggaat
cagatgcaatttattgcaggaaaatataccttggacccaattcgtgttttagatgtggtc
ctcagaatttcatccatatatatccataatcactatgattttctgctggacttattgaaa
gtttccgattattggcctcatgaaatctcagatccgtttgactggaataaattgaattat
ggtggcaatgtagttgcttcacggctgatcgcctacaaattatctaacgaaaaatttgat
cataagtatatggacatggtctgcatattgataaaagaaggtttcatctcgtatatttct
atctttgaggctttgaggcctgatgaagagacagtgcaaacttatgttgaagagtattat
gccgatttagaaaagcagtcttcagaaggagttttaaatcccttagctatggctgcggca
ttaccggatgaagatgaaacctctgcacctgcagctaatggggaacagaagagcgatggc
caagttaatgtaaagaaagagaaggaaaggcaggaacagagagaggaaaaggaaaggaag
aatagacactatagggtgaagcggactgggaagtggagattagtaacaagttgcctaaat
catggactattattccctgcattgtattccataaaaaaaaatgaaaaggtcgcattatct
attgacgccctggtagaggcgtgtattagaatatttgattacatgatacaaccattatat
gaacaggcaattaatgcaccaaaatgtaacgctgtttctagagtcaccatgaaaatgtcg
aatagtggtttaccatctaaagagccgcgtttaattcatgaatatgtatctccaaatgtg
agtgagcggttcctgtttaatgtgaagtattcattttattatactgagtggaccgataag
ttacctgttcttcacaatattgaagacttatttcgttattctcatcagatacttggtctt
cttggtccaagactgtcggtgtcttcatctgtaattaccaaactcaattctattgcagtt
catgatattgaatcttcaaataactccgaagatacaatagagatgtggattaactatttt
agaaaatttatatttcctgcaattgctgctatagaagacgacttcgtgccaaatttatcc
gcctatgaattaatgaaaagattcccatttgaaaaacggtactttttgtataatgaaatg
tacactaagacatcaaacgataacgtctttgttagattggcctttaataaagtggggaaa
aggataaaaactttattaaaatccttaagtattgatgacatcgctgataaggtaaatgat
gtttcgagaattgtatccagtaatccgctagcggcattgggacccattgttaatcaaatt
gagaattatgataaggtttcagaacttgttgtgatttcagcaaataagtttcctaaaatt
gcttacgatatcttacaatatgttctattgttgaaattgacttcaggcagaaatttatta
cagagtgacggtataaatcaaaacacttggatccaacggctaagtgtattcatcgctgga
ttggcaaagtcttgccctgaaatggatttaacgaatatattgactttcttagtgaagagt
ttgcataagaatcgcaatgtatcctttccggttcttaaggaactaatatctaaggttggc
gggattcaaaatttgaatcacgtaagttctcaacaactccagatgctaaattctgggcct
tcgctgcaaaaagttgccagatctttgatattagacacaagacaagatacatttgaagct
gcacgagcaatcacacaagtctttgtgaaattaaatgctattactgagttaatcgtaatg
ctttgcaacctgaatatttcaaatcaatctgatgatatacattataaaatattgtctact
aaatgtgacgattctaattctttgttgtggacactaattgaaatgttaaaacatacacta
tcattggaggaatttgtttccaatgttttgccattttatgaactggtaaatgactataat
gtaccaattgaatggagctttcatatatggagagatttttttgatgagaaaatccacgaa
ggtgatgaatctatgaaacaaattgatgaaattattgaaaaaactgaatttaaatatgtg
tcatttgagaatttaaacaaggaattatttactaatttctggaaattgtcgctttatgat
gtgcagtttaacaaagcgttatatgataaaactacaagcgctttaaactcaaagttaaat
gcggtaaaattacagcgtgagcgcaattccattatgaacgatgtacaagaagtaatgtcg
aactgtttagctcatcaaagggcctttaagcaaatacaagaacttttgcagggaaataaa
gaaaagtggctcccagagttgaacgctgaaacaaatcaagcattctttcagttctgtatt
ctaccaaggactttattttcttctgccgacgcaatttacagtgcactgttcattgttgaa
ctttgtggtattcagaattctttcagtatcttcaaattttttgttgattctcatatcctt
ggtggtcttctgttctcctgtactgttactgagtcagctaatatgggctttttcactaat
gttttactaaatacttttgaaaaagctaggtctgaaggtgtctttgataactgcagcctt
gaggagatctatcgattacattctattatgataggagatttgactggtttgctagctgaa
tcgaattacatgtcaattaggaatagtattgaatttctcaatcaaatttcacataaattc
ccagttgttgatgagcatataaaggaactttgtcattctttggaatataagttagtcggt
gataatagagaagatataagattaccctgtaatgctttaattggtcacctcaaaagccgt
ctaaagaatgcttcccggaaacaagatttttatgagcttccggaggaggaattgttagaa
atccgtaaacttgatgaagaacgtatgctaatcaaaaaatatcaggagtcattagctcaa
gaagacgaagcaaagaagttggaagaggaaagtaagatgaatatattaaagcctctagat
gatagagtggagagcagatatatggcaaatacaggtgaagctgatagtacagacgcagaa
aagacgaaacagcaatcagaagctgtctcctgtcaactccatcagattttagataacatg
gaccaagtgctaaatctcctaagaactgaatcagctgaagaagcaccaagatttattaga
gtcgttttcttcaaaaatgaatttaagaaagttatcaatgactacaaaggtgaccttgaa
ggttttaggaaaaatattgctaatattttggttgactatttctacagtatggtgcagtgg
ccccaaagtaatccaacatttgtccagaaggcccgggatattaagacagcatgtttgaaa
tgtaatgcccctattagcaaggcaacgaagataaaggtgatggctgatgacctatatggc
gaagatatagcgtcctcctgggcaaccaatcccaaagcagctagaacaaatagagaaagt
cggtttgcaggtgctaaaccagtacctaacctaacttctgatacaagtacttcaaacgag
aacaagtggaagactgaacgagtggaaaaaactgcaatagacactagaaatacttcgaga
tatgccgatgaggatacaaagtcatcaacacaaaccaaaaaagatgacaagccatccggt
tcccgtttcaacaacggcaaggtgcccgttaaaaagcctgttgataataaacaagatcaa
aagccatccaacagtctacgtaacagagtcggttccagattcgaaggtaggcaagaaaac
agcactagattttctggccctagagcagaccctataagattccccacagcccctgcccgt
catgcagaacctgttaacgaaagtcgatttcgaaatatgcccaaagaactgtcacggaaa
cgagctgctgaagattacagatacggtgatagcaagcgtcagagacaggaagatgataat
cgaagaaaaccaaccaaagaaactcgtggagaacaacacccaactgctattctgagtcag
aagaaaggtggattcagtagatttcgataa
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