KEGG   Eremothecium cymbalariae: Ecym_6383
Entry
Ecym_6383         CDS       T02237                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
erc  Eremothecium cymbalariae
Pathway
erc03018  RNA degradation
erc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:erc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Ecym_6383
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ecym_6383
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:erc03019]
    Ecym_6383
   03041 Spliceosome [BR:erc03041]
    Ecym_6383
Messenger RNA biogenesis [BR:erc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Ecym_6383
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Ecym_6383
Spliceosome [BR:erc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Ecym_6383
SSDB
Motif
Pfam: LSM SymE_toxin
Other DBs
NCBI-GeneID: 11469143
NCBI-ProteinID: XP_003647575
UniProt: G8JUH8
LinkDB
Position
6:join(747850..747861,747978..748325)
AA seq 119 aa
MSESDKPQQQQQQQGHQQQKKKFEGPKREAILDLAKYKDTKVRVKVMGGRLVIGILKGYD
ELMNLVLDETVEYLRDEDDSSVILEGKTRNLGLIVIRGTILLSLSPVAGGDLIAGPASN
NT seq 360 nt   +upstreamnt  +downstreamnt
atgagtgagagcgataagccccagcagcagcagcagcaacagggacaccagcagcagaaa
aagaagtttgagggtcccaagagagaggctattcttgatctagctaaatataaagatacc
aaggttagagtcaaagtgatgggtggacgcctggttattgggatattaaaaggttatgat
gagttgatgaacttggtattggatgagactgtcgaatatttaagagatgaagacgattct
tcggttatattggaaggcaaaactagaaatttgggattgatcgtaatcagaggaactatt
ttactgtctctatctccagttgcaggtggtgatctcattgcaggaccggccagcaattga

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