Eremothecium cymbalariae: Ecym_7005
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Entry
Ecym_7005 CDS
T02237
Name
(RefSeq) hypothetical protein
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
erc
Eremothecium cymbalariae
Pathway
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_7005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_7005
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Ecym_7005
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Ecym_7005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
YceM-like_C
Motif
Other DBs
NCBI-GeneID:
11469283
NCBI-ProteinID:
XP_003647680
UniProt:
G8JVJ8
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All DBs
Position
7:6276..7568
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AA seq
430 aa
AA seq
DB search
MQTISGQMTEFPDGEQFYLRQQAQQGHPGQQQPTGLPQMFSPQVNQGRLMTQQQHLLHGI
DTGQDLQATYLLKQKMEAANAAFGHQQQSLQPQQAQQQLLTTGVINGPPGVSMVQTGVGG
LAPPPGTLPPQLSINTGVRGTTIGLAPAAPVIHHPNHLLVREVWANNLTSEFASIRRLVD
QYNFIALSTEFVGTIVRPIGNFRSKNDYHYQTMRTNIDLLNSVQIGLSLSDSQGNKPENT
PSTWQFNFHFDVTKEMVSPESLDLLKKSGVVFDKHQNNGVEPYDFAQLLVDSGLLLSDEV
TWVSFHAAYDFGFLINILTDTAMPNNKEDYEYWVQKFLPNFYDLNVISKSVQDLIQQRNQ
QLQQGQQYSLESLADEVGIPRFPLFNTTGGQSLLALLTFTRLSKFPFFKLPNGKTDLSQF
KNSIYGINKE
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactatcagtgggcaaatgacggagttccctgatggtgaacagttttaccttcgt
cagcaagcacagcaggggcatccaggccagcaacaacctacaggcttaccgcaaatgttc
tccccccaggttaatcagggtaggttaatgacgcaacagcagcatttattacatggtatt
gatactggccaggatttacaagcgacatatttgttaaaacaaaagatggaggctgcaaat
gcagctttcggccatcaacagcaatctcttcaaccgcaacaggcgcaacaacaacttctg
acaactggagtcataaatgggccgccaggggtttcaatggttcaaacaggtgttggcggc
ttagcacctcctcctggaactttacctccgcagctttctattaatactggcgtgcgtggt
acgaccatcggattagcacctgcagcccctgtaattcatcatccaaaccatttgctggtt
cgtgaagtatgggctaataatttaacttcagagtttgcgtccataagaaggttggtagat
caatacaacttcattgccttgagtacggagtttgtaggtactattgtgaggcctatcggt
aattttagatccaagaatgattatcactaccaaaccatgaggacaaatatcgatctactc
aattcagtgcaaattggattgtcactaagtgattctcaaggtaataaacctgaaaataca
ccttcgacgtggcagttcaattttcattttgatgttacaaaggagatggtttctcccgaa
tcgttagatcttttgaaaaagtctggcgttgtatttgacaaacaccagaataatggtgtc
gagccatacgattttgctcaattactagttgattcagggcttttgttatctgatgaagta
acctgggtaagctttcatgctgcttacgactttggattcctgattaacatattgacagat
actgcaatgcctaataataaagaagactatgaatattgggttcaaaagtttcttccaaac
ttttacgatttgaacgtaattagcaagtctgtccaagatttgatacaacaacgcaatcaa
caactacaacaaggccaacaatacagcttagaatccctagcggatgaagtgggaattcca
agatttccgctcttcaatactacaggcggacagagtttgttggctttactaacgtttact
cggttgtctaaattcccatttttcaaattacccaatggcaagactgatctaagccagttc
aaaaactccatctacggcattaataaagaatga
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