KEGG   Eremothecium cymbalariae: Ecym_7382
Entry
Ecym_7382         CDS       T02237                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
erc  Eremothecium cymbalariae
Pathway
erc03018  RNA degradation
erc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:erc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Ecym_7382
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ecym_7382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:erc03019]
    Ecym_7382
   03041 Spliceosome [BR:erc03041]
    Ecym_7382
Messenger RNA biogenesis [BR:erc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Ecym_7382
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Ecym_7382
Spliceosome [BR:erc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Ecym_7382
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 11472645
NCBI-ProteinID: XP_003648025
UniProt: G8JWJ3
LinkDB
Position
7:793044..793367
AA seq 107 aa
MSPLLKDFLNRQIVVITTEGDCFTATLEGYDKTTNLLLSNVKERLTGSKVAGSYLLQGSQ
IVCCGPLEGSEEIGQEHLREMVQLKNTKNMVEMEHIVWSKVWESTTH
NT seq 324 nt   +upstreamnt  +downstreamnt
atgtccccgctgctaaaggacttcttgaaccggcagatcgtcgtgattactacagagggt
gattgcttcacagctaccttagaagggtatgacaaaacgacaaatctgcttctgtcgaat
gtgaaagagcgattgacagggtcaaaagtggctgggtcatacttgctgcaaggatcgcag
atagtatgttgtggtcctctggagggttcagaagagatagggcaagaacacttgcgagaa
atggttcaattgaaaaataccaaaaacatggtagaaatggagcatattgtctggtccaag
gtgtgggaatctacgacgcactga

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