Eremothecium cymbalariae: Ecym_8383
Help
Entry
Ecym_8383 CDS
T02237
Name
(RefSeq) Hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
erc
Eremothecium cymbalariae
Pathway
erc03008
Ribosome biogenesis in eukaryotes
erc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ecym_8383
09123 Folding, sorting and degradation
03018 RNA degradation
Ecym_8383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erc03019
]
Ecym_8383
03009 Ribosome biogenesis [BR:
erc03009
]
Ecym_8383
03016 Transfer RNA biogenesis [BR:
erc03016
]
Ecym_8383
03036 Chromosome and associated proteins [BR:
erc03036
]
Ecym_8383
Messenger RNA biogenesis [BR:
erc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Ecym_8383
mRNA degradation factors
5'-3' decay
5' exonucleases
Ecym_8383
Ribosome biogenesis [BR:
erc03009
]
Eukaryotic type
Pre-60S particles
RNases
Ecym_8383
Transfer RNA biogenesis [BR:
erc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Ecym_8383
Chromosome and associated proteins [BR:
erc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Ecym_8383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
11470005
NCBI-ProteinID:
XP_003648470
UniProt:
G8JXS9
LinkDB
All DBs
Position
8:779290..783729
Genome browser
AA seq
1479 aa
AA seq
DB search
MGIPKFFRYISERWPNISQLLDGSQISEFDTLYLDMNSILHTCTHGNDADVTKRLSEEEV
YLKIFTYIDHLFRTIKPKEVFYMAIDGVAPRAKMNQQRSRRFRTAMDAEKALKKAIENGE
EIPSGEPFDSNCITPGTEFMAKLTKNLKYFIHEKISSDSLWRQANVILSGHEVPGEGEHK
IMEHIRILRSQKDYNPNTRHCIYGLDADLIILGLSVHDSHFALLREEVLFGKNHNSKPLE
QQNFFLLHISILREYLELEFAELENELMFEYDFERLLDDFILVLFVIGNDFLPNLPDLHL
NKGAFPVLLQTFKEALRHMDGYMNECGTINFSRFSIWLEYLSKFEKANFERSDIDIEWFN
QQLENISLEGARKRVKSGKKLLLKRQRQIVGAVKPWLLKTVEEKLSANVSDADITLSPPL
AGHLVANNIDFLKELAFELYLVVVHSQSQDTYTFKVDLDSFNLNASEEEHKSRLSNLRRS
IKIFEQATIVDDEEELEEKMEIYDDRFNQWKDAYYKEKLGFSYYDDEKLKEQTENYVEGL
QWVLYYYYQGCPSWSWYYKYHYAPRISDIIKGINKKISFEKNRPFTPFQQLMSVLPKRSK
NLIPPVYRPLMYDEKSPILDFYPNDVELDKNGKTADWEAVVKISFVDAERLIKVMAPYDE
KLNQEEKDRNRFGTDILFCFNPQIDNVYESPLKGLFTNIAHNHCIERKYIMRPLETSDIR
FGLPEGAKLGTSALAGFPSLKSIPFENKLVYNECTIFQQRSKYQTMLLYVKDIYQASNMS
ISDIAQRYMNKIIYTNWPYLRESKLVGIYSRDVIYESTEAQDGVRSNFITKSSTPDDLKW
ILPMNSSMKQTYSKKSGIILDDIRAIIKVYPVTGLARELDGSYTKTFSKTEEYYPLQLFI
EDVENKDERYQETPPLPIEEEYPLNSRVIFLGDYVYGGEAIVDGYSSPTRLRLTINKRST
RMEPNIGKIRASMDKKAIRYIPSYIVARKLNLPPLFLSKITSKFLIDAEKSLHNVGLTVK
IQSANVKALGYANKNGTIWEYSTLTIQLLEHYRNTFPEFFNSLSKLQGNMISINSVFPNK
SPQEATKILEAVAAYVGDLRSQFIMVSLESDSLTKASIHAVETEIQRFVQLEDRTEKRQL
AKVPREAVLDPNRSSAQLRAQRFDLGDRVMYVQDSGNVPLFAKGTVVGYTTIGTRLSIQV
LFDQEFVAGNTLGGRLTTKRGIGLDSSFLLNITNRQFIYHSKASIKTVGQTGNFKQPKVQ
SDHTLTTVQQKMKMEELKKRQAHEMLSMIKKDDQKNDRPERGHKVSDVSNSSAPNSKTSN
VQVALNAVGKNVATNVYNAVLNQVTNPGSQQPVLFAMPPQGSQEAMHLQGMLAVPPDGMM
VPPNPLMFSVPSHPIGTLPNVHCSFPPSNTMTSPKPVSISTKMSSGSYSGSEKSVSRSSN
SFGSDNSKIKRGKNPNRGRRRNNRGASPQRGRDTFSPSQ
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgggtattcctaaattcttccgttatatatctgaaagatggccaaacatttctcagttg
cttgatggcagtcaaatatctgagtttgacactctatacttggatatgaattcgattcta
cacacatgcactcatggtaatgatgctgatgttacgaagagactgtcagaggaagaggtg
tatttgaagatatttacttatattgaccatttattccgtactatcaagcctaaggaggtt
ttttacatggcgatcgatggggttgctcctagggctaaaatgaaccaacaacggtcacgg
agattcagaacagctatggatgccgaaaaggctttaaagaaggctattgagaatggcgag
gagatacctagtggagaaccgttcgactccaattgtatcactcctggtacggagtttatg
gcgaaattgactaaaaatttgaagtattttattcacgaaaaaatatcttctgattcgtta
tggcggcaagccaatgttatattgtctggtcatgaagttcctggtgagggggagcacaag
attatggaacatattagaattcttaggtcacagaaagactacaatcctaacaccaggcat
tgtatatatgggctagatgcagatctgataattttaggcctgtcagttcatgattcgcac
tttgctttactgagggaagaagttttatttggaaagaaccataattctaaaccgttagag
cagcagaacttttttctgttacacataagcattttgagggaatatctggagttagagttt
gctgagttagaaaacgaacttatgtttgaatatgattttgaacggttgctcgatgatttt
atcttggtgttgtttgtgattggtaatgatttcttgcccaacttacctgacttgcatttg
aacaagggtgcgtttcccgttttactccagacgtttaaagaagcgttaagacacatggat
ggctatatgaatgaatgtggtaccataaatttcagcagattttccatctggcttgaatac
ttgtccaagtttgaaaaggcaaattttgaacggagcgatatcgatattgagtggttcaat
cagcaacttgaaaatatatctttagagggtgcacgtaaacgggtcaagtccgggaagaag
cttctactaaaacgacagagacaaatagtaggtgctgtgaaaccgtggctgttaaaaaca
gttgaagagaagctttccgcaaatgtttctgatgccgatatcacactgtctcctccttta
gctgggcacctagttgcaaacaatattgacttcctcaaagagttggcttttgaattgtat
ttggttgttgttcattcccagtcacaagacacttacacctttaaagtcgatctggacagt
ttcaatttaaatgcgtctgaagaggagcataagtcacgtttaagcaatttaagacgttct
attaaaatttttgaacaagctaccattgtagatgatgaggaagaattggaggagaaaatg
gagatctacgatgatcgtttcaaccaatggaaggatgcttattataaagaaaaattgggg
ttttcttattacgatgacgaaaaactaaaggaacaaactgaaaactatgttgaaggccta
caatgggtgttgtattattattaccaaggttgtccttcatggtcatggtattataaatat
cattatgccccccgtatttcagatattatcaaaggtattaacaagaaaatttcctttgaa
aagaatcggcctttcacaccattccagcagttaatgtccgttttgccaaaaagatctaaa
aatttgattccacctgtttatagacccttgatgtatgatgaaaaatctccaatcctagac
ttttatccaaatgatgtcgagttagataaaaacggcaaaacggcggattgggaagccgtc
gtcaaaatatcttttgtcgatgcagagaggttaataaaagttatggctccttatgatgaa
aaattaaatcaagaagagaaagataggaatagatttggtactgacatacttttttgtttt
aacccacaaattgataatgtctacgagtctccattaaagggtctattcactaatattgcc
cacaatcactgtattgaaaggaaatatattatgcgcccgttagaaacaagcgatattcgc
tttggcttgcctgaaggtgccaaattgggcacttcagcgctagcaggatttccatcttta
aaatctattccatttgaaaacaaacttgtctacaatgaatgtactatatttcaacagcgt
tctaaatatcagactatgttgctatacgttaaagatatttaccaagctagcaacatgtct
attagtgatatcgcccaaaggtatatgaataaaattatttataccaactggccatatttg
cgagagtcaaagttagttggaatatattccagagacgttatttacgaatccacagaagca
caagacggcgttagaagcaactttatcacgaaatcctccactcctgatgatttaaaatgg
attcttccaatgaattcctcaatgaagcagacttattcaaagaaaagcggtattatactg
gatgatattcgagctattattaaggtatatccagttacgggtctggctagagagttggat
ggctcctatactaagactttttccaagacagaagaatactaccccttacaattgtttatc
gaagatgtcgaaaataaagacgaaaggtatcaagagacgccaccgttgcctattgaagag
gagtatcctttgaattcaagggtcatcttcctcggagattatgtatatggtggagaagca
attgttgatggttattctagcccaaccagattacggttaactattaataagagatccaca
agaatggagccaaatattggcaaaatcagggcaagtatggacaagaaagcgattcggtat
ataccatcctatattgtggctaggaagttgaatttaccccccttattcctctccaaaatt
acctccaaatttttgattgacgctgaaaaaagtctccacaatgtaggcttgacagtgaaa
atccaatcggctaacgtgaaagcgctcggctatgcgaacaagaacggcactatatgggaa
tattctactttaactatccagctattggagcattatagaaatactttcccggaattcttc
aatagtttatcgaaattacagggtaacatgattagtattaatagtgtttttcctaataag
tctccacaggaagccactaaaattttggaagctgttgctgcatacgttggagatctaaga
agccaattcattatggtctctttggagagtgactctttgacaaaggcgtcgattcatgcg
gtcgaaacggaaatccaaagatttgttcaattggaggatcgaactgaaaagaggcagcta
gcgaaggttcctcgggaggctgtcttagatccaaacagatcttccgctcaattacgagca
cagaggttcgatttgggtgatcgtgttatgtacgttcaagattctggcaatgtaccattg
tttgcaaagggtactgtcgttggttatacgaccatcggtactagattatcgatccaagtt
ttatttgatcaggaatttgttgcaggtaacacccttgggggtaggttaaccaccaagcgt
gggatcggattggattcatccttcttattaaacattaccaacaggcagttcatttatcat
tccaaagcttccataaaaaccgtgggtcaaaccggcaactttaagcaaccaaaagttcaa
tctgatcatacgttaaccacggtgcagcaaaaaatgaaaatggaggagctcaagaagcgc
caggctcatgaaatgttgagtatgataaaaaaggatgatcagaagaatgacaggccagag
cgagggcacaaagtttcggatgtttcaaattcttccgcccctaattctaaaacttcgaac
gtgcaagtagccttgaatgctgttggaaaaaatgttgcaactaatgtttacaatgcagtg
ctaaaccaagtcacgaatccaggttctcagcaacccgttctatttgcaatgcctccccaa
ggttcgcaagaagccatgcacctccaaggaatgctagccgtgccacctgatggtatgatg
gttcccccaaacccactgatgtttagtgtaccatctcatcctattggaactttgccgaac
gtacattgtagttttccgccctcaaacacgatgacatcgccaaagccagtttctattagt
actaaaatgagcagtggatcgtattcgggtagcgagaaatctgtttcacggtcctcaaac
tcctttggatcagataactctaaaatcaaaagaggtaaaaatccaaaccgtggtagaaga
cgtaataatcgtggtgcatccccccaacgaggtcgtgatacctttagcccatcacaatga
DBGET
integrated database retrieval system
