Erysipelothrix sp. HDW6C: G7062_08385
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Entry
G7062_08385 CDS
T06512
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erd
Erysipelothrix sp. HDW6C
Pathway
erd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7062_08385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erd03019
]
G7062_08385
Enzymes [BR:
erd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7062_08385
Messenger RNA biogenesis [BR:
erd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7062_08385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
P-loop_SecA
Cas3-like_C_2
HP0268
Motif
Other DBs
NCBI-ProteinID:
QIK70309
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All DBs
Position
1761481..1762884
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AA seq
467 aa
AA seq
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MKFEDLGINANILSALEAQNYTQPTPIQEKAIPFVLRGRDVLGLAQTGTGKTAAFAVPTI
QRLSATKTEGKRKIRSLVLSPTRELALQIHESFENYAVNTKIRSAVIFGGVSQVPQVKAL
RSGVDVLVATPGRLNDLIKQKHVSLDDVEIFILDEADRMLDMGFIHDIKRILPLLPKKKQ
TLLFSATMPPEITEIVDSLLKNPIEVSVAPVSSAVDTVEQFVYYVDRNNKTKLLIDILKE
KSDANVLVFTRTKHGADKVVRELLKHQVSAAAIHGNKSQTARQIALANFKEGKIQVLVAT
DIAARGIDIDELSYVINYDLSDVPETYVHRIGRTGRAGSTGVAIAFCNFEEIPLLKQIES
LIRKKITVIENHDYPLIDKTVKPKKQNKKAKARAAAVKETQPRRKPKPVSKDKGAPKAGQ
KKSDGKASKARRGKNDTAEKKENGPYNWSNHQSKKKPRKPARKKTTV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatttaggaattaatgctaacattttgtcagcattagaagcacaaaat
tatacacagccaacacccatccaagaaaaggcaatcccgtttgtattacgcggtcgcgat
gttttgggtctggcacaaactggtacaggaaagacagctgcctttgcagtacctacgatt
cagcgtttaagcgcaacaaaaacagaaggcaagcgaaaaatacgctctttagtgttaagc
ccaacccgtgaacttgcattgcaaattcatgagagttttgagaactatgctgtaaacact
aaaattagatccgctgtaatttttggcggtgtctcccaagtacctcaagtaaaagcatta
cgcagtggcgtggatgttcttgttgctacacccggtcgtttgaatgatttgatcaaacaa
aagcatgtgagtctggatgatgttgagatttttatcctcgatgaagcagaccgtatgtta
gatatgggattcattcacgatatcaaacggattcttcccctgttaccaaagaaaaaacaa
acactacttttctcggcaacaatgccccctgagattacagaaattgtcgattcactttta
aagaatccaattgaggtatccgttgcacccgtatcatcagcagttgataccgttgaacaa
ttcgtttattatgttgaccgcaataataagacaaaactcttgattgacattttaaaagaa
aaatcagacgccaacgtccttgtctttacgcgtaccaaacacggtgccgataaagttgtt
cgtgaactcttaaaacatcaagtgagcgcagcggcaattcatggaaacaagtcacagact
gcgcgccagattgccctcgcaaattttaaagaaggtaaaatccaagttcttgtggctacc
gatattgctgcacgtggtatagatattgatgaattatcgtatgttattaattatgattta
tccgatgttcctgaaacctatgtacaccgtattggtcgtacgggtcgtgcgggttcaact
ggagtcgcgattgcattttgtaatttcgaagaaattccattattgaaacaaatcgaatct
ttgattcgcaagaaaattaccgtgattgaaaatcacgactaccctcttatcgataaaaca
gtaaaaccaaagaaacaaaacaaaaaagccaaggcacgtgcggctgctgtcaaagagaca
caaccccgtcgcaagcccaaacctgtttcaaaagataaaggtgcaccaaaagctggccag
aagaaatcagatggtaaagcttccaaagcacgtcgtggaaaaaacgataccgctgagaag
aaggaaaatggcccttacaattggtccaaccatcaatcaaaaaagaaacccagaaaacca
gcacgtaagaaaacgactgtataa
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