Erysipelothrix sp. HDW6C: G7062_08460
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Entry
G7062_08460 CDS
T06512
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
erd
Erysipelothrix sp. HDW6C
Pathway
erd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7062_08460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erd03019
]
G7062_08460
Messenger RNA biogenesis [BR:
erd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7062_08460
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
PA-IIL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QIK70324
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Position
1778249..1780039
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AA seq
596 aa
AA seq
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MTKEENNVSIKKTDTLVYALGGLGEVGKNMYVIEHEDEIIIIDSGVMFPEDDLLGVDYVI
PDFSHLVKNQKKIKALIITHGHEDHIGGIPFLLQRVTIPQIYAPRFAKAQIERKLEERKI
KTKHQIQEIDSKSKVTTKHFVIGFFNVVHSIPDALGVLVNTPNGRIVSTGDFKFDLTPVG
ENPDYQVMSYMGEIGVTLLMSDSTNAQVNGFSISERDVAREINRIFKKVEGRIIIATFAS
NVYRVQQIIEAAIAQGRKIAVFGRSMENVITIARKLGHIKASDKNFVNANQLNKLPANQA
LILCTGSQGEPLAALSRIANGTHRQINIIPNDTVIFSSSPIPGNGPSVSQVVNKLTRAGA
NVLTNSPLNSLHTTGHASKDEQTLMLQLIKPKFFMPMHGEYKMLKTHRQTAIETGVDPDN
IFICSNGDVIALRDEKAFMTDIRIQADDIYVDGNDSSGLSTAVLKDRKVLSDSGLVSVVV
TIDSRQNKILTKPSIVSRGFVFIKENQPLLKEAEQVVYEALKKRMQKKVTFGEIKNTIRG
ALEPFLYKHTQRNPLVIPVILNQRSAVQTPPAPKKEAPKKKAPQKKPVVKKEADVA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagaaaataatgtaagtatcaaaaaaaccgataccctagtctatgcatta
ggcggactgggcgaagttggaaaaaatatgtatgtcatcgaacacgaagatgaaattatc
atcatcgattccggtgtcatgttccccgaggatgaccttctcggtgtggattatgtaatc
cctgatttctcacaccttgtgaaaaatcaaaagaagatcaaagcactcatcattactcac
ggtcacgaggaccacattggaggaattccatttttactccaacgcgttacgattccgcaa
atttatgcaccacgttttgcgaaagcacaaattgaacgtaaattagaagaacgtaaaatc
aaaacaaaacatcaaattcaagagattgattcaaaatcaaaagtcacaacaaagcacttt
gtgattggattctttaatgttgttcactccattcctgatgcattgggagtgttggtaaat
acacccaacggacgcattgtttctactggagactttaagtttgacttaacccctgttggt
gaaaacccagactatcaagtcatgtcatatatgggtgaaattggtgttacactgcttatg
agtgactccacaaacgcacaagttaatggtttctcaatcagtgagcgtgatgttgcccgt
gaaattaatcgaatctttaaaaaagtcgaaggacgtattatcattgcgacctttgcctcg
aacgtctaccgtgtccagcagattattgaagctgcgattgcacaaggtcgtaagattgct
gtctttggtcgttcaatggagaatgtcattacaatcgcccgtaaactggggcacattaaa
gcttctgacaagaacttcgtaaatgcaaaccaattaaacaagctgcctgcaaatcaagca
ttgattctatgtacaggttctcaaggtgaacccttggctgcactaagccgtattgctaat
ggtacgcaccgtcaaattaacatcatccctaatgacacagtcatcttctcatcaagtcca
atcccaggaaatggaccgagtgtatcacaagttgttaataagctaacacgtgctggtgca
aatgtacttacaaactcacccttaaactcgttgcatacaacaggacatgcttctaaagat
gaacaaacattaatgttacaacttatcaagccgaaattcttcatgccaatgcatggggag
tacaaaatgttgaaaacacaccgccaaacggcaatcgaaaccggtgttgatcccgataac
atcttcatttgttcaaatggtgatgtcatcgccctgcgtgatgaaaaagcgtttatgacc
gatatccgtatccaagcagatgacatttacgtggatggaaatgattcaagtggactttcg
accgcagtccttaaagaccgtaaagtcttatctgacagtggattggtttccgtagttgtt
accattgattcacgccaaaacaaaatccttacaaaaccaagtatcgtaagtcgtggcttt
gtctttattaaagaaaaccaaccacttcttaaagaagcggaacaagtcgtttatgaagca
cttaagaaacgcatgcaaaagaaggttacctttggtgaaatcaagaataccatccgtggt
gcccttgaacccttcttatacaaacacacacaacgcaatccgttggtcatccctgtaatt
ttaaaccaacgttctgctgtgcaaacgccacctgcacctaaaaaggaagcacccaagaaa
aaagcgccacaaaagaaacccgtcgtaaagaaggaagccgatgttgcgtaa
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