Agathobacter rectalis ATCC 33656: EUBREC_3287
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Entry
EUBREC_3287 CDS
T00909
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ere
Agathobacter rectalis ATCC 33656
Pathway
ere03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ere00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUBREC_3287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ere03019
]
EUBREC_3287
03009 Ribosome biogenesis [BR:
ere03009
]
EUBREC_3287
Enzymes [BR:
ere01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EUBREC_3287
Messenger RNA biogenesis [BR:
ere03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EUBREC_3287
Ribosome biogenesis [BR:
ere03009
]
Prokaryotic type
rRNA helicases
EUBREC_3287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACR77013
UniProt:
C4ZDN7
LinkDB
All DBs
Position
complement(3120850..3122442)
Genome browser
AA seq
530 aa
AA seq
DB search
METIRFDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGI
PVLESVDASSHKTQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKAL
KGGVQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQ
TVLFSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDY
YNPKLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIAT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQR
YCKTKIYAQPIPSSDDVAKIRAEKIMDQISTIIDEENLTSVIDIIENQINESDYTAMDIA
AAFLYQAMGASEISTAESKDDYDFHNTGAEDGMVRLFINVGKKDKIKPGDILGAIAGESG
MPGRLVGAIDMYDKYTFVEVPAEYGKEVLNAMKNAKIKGRSVNMEPANSR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaatcagatttgacgaattagaactaaaccctaagattttgcgaggcatcaag
gatatgggctttgaggaggcaactccaatacaggctcagggaatcccggcagtgctttcg
ggcagggatgtaatcggacaggcgcagaccggaacaggaaagacagcagcctttggtatt
ccggtgcttgagagcgttgatgcatcaagtcacaagacacaggttatcatcctctctcct
acaagggagcttgccatccaggtggcagatgaaatcaggaagcttgcaaaatatatgcat
ggtgtgaaggtacttccggtatacggaggacaggatatcagccgccagattaaggcactt
aagggcggtgtgcagattattatcggaaccccggggcgtcttatggatcatctcaggaga
aagacaatcaggcctgaccatgtaaagacaatagtgctcgacgaggcagacgagatgctc
aacatgggctttagggaggacatcgagacagtgctcgaatacctgccacaggagcatcag
acagtactcttctcggcaacaatgccaaagcctattttggaaattacaagaaaatatcag
catgatgccatcaacatcaagattgtgaaaaaagagctgacagtcgcaaatatcgaccag
tattactatgatgtgaagcgcaaggacaagatagatgtactcacaagactgttggattac
tataatccaaagctctcacttgtattctgcaacaccaagaagatggtcgatgagctggca
tatgagctttgcgggcgcggctacagtgcagagggacttcatggcgatatgaagcaggtg
cagagagatcgtgtcatgaagaacttcagaaacggaaagacagatattcttattgccact
gatgtcgcagcgcgcggaattgatgtggatgatgtggaggctgtttttaattatgatctg
cctcaggatgacgagtattatgtacatagaatcggccgtacaggaagagcaggccgctgt
ggaaaggcattctcctttgtaaagggcaaggaggtatataagctcaaggacatacagcgc
tactgcaagacaaaaatctatgcacagccaattccatcatctgatgatgttgccaaaatc
agggcagaaaagattatggaccagatttccaccattatagatgaggaaaatctcacaagt
gtcattgatattatagagaatcagataaatgagtcagattacacagcaatggatatagcg
gcggcatttttataccaggctatgggtgcttcagagatatccacagctgaatcaaaggac
gactatgatttccacaatacaggagcagaggatggcatggtacgtctgtttatcaacgta
ggaaagaaggacaagataaagccgggtgacattttaggtgccattgcaggcgagtcaggc
atgcctggcaggcttgtcggtgcaatcgacatgtacgataagtatacatttgttgaggta
ccggctgagtatggcaaggaagtgcttaatgccatgaagaatgcgaagataaagggccgc
tctgtgaacatggagcctgcaaattcacgatag
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