Erythrobacter sp. THAF29: FIU90_07600
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Entry
FIU90_07600 CDS
T06318
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
erf
Erythrobacter sp. THAF29
Brite
KEGG Orthology (KO) [BR:
erf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erf03019
]
FIU90_07600 (hrpB)
Enzymes [BR:
erf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FIU90_07600 (hrpB)
Messenger RNA biogenesis [BR:
erf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FIU90_07600 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
Flavi_DEAD
HA2_N
AAA_22
Cas3-like_C_2
ResIII
AAA_19
AAA_25
DUF3726
Motif
Other DBs
NCBI-ProteinID:
QFT77403
UniProt:
A0A5P9GUL8
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All DBs
Position
1553219..1555645
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AA seq
808 aa
AA seq
DB search
MSPDLPINAVLPDIAGALARDGAAVLVAPPGAGKTTAVAPALLDEEWCSGQIIITSPRRV
AARAAAERMAEMMGEEVGGTVGYLTRLDSKSSSRTRILVVTEAILVNRLVDEPDLPGISA
ILFDEAHERHLDSDLGLALAIESREVLREDIRILVMSATIDGTRFAGLLGDGATVVESEG
RSHPLEIRWLGSNPALSIEDEVATGIMTAWREQAGDILAFLPGVREIERVRERLAARLPD
TPILPLHGQVEPAGQRAAIRRDANGRRRIVLATAIAETSLTLDGVSVVVDSGLARYAEFD
RAAGTTHLVTRRASQAAATQRAGRAARQGPGVAYRLWEEGGHAGRPEFAPPEIAIADLAP
LVLKLAKWGSTDPAAMAWLDPPPEASIEAARDNLRSLGALDEAGRITQWGEAIASMPMAP
DHAAAILHGARAGCAEDAARLVMLLQERGLGGPGEDLSARLARWRSDKTKRAQSADRIAR
RWATMAQERSGKGDCPARSAEECLALARPDFLAKRRDASGERWISAGGRGFVLDPASPLA
GSDWLVVLDAQGQARGARITSAVPIDASRIEALFSNRIEDRSIARWNNTEKRAESRREKR
LGAITLARGPDANPDPATLVDILVEKALESLGEIFPAGFLARANFAGIEALSEAALRENA
SLWLAPLLEGRRDHALPPARYAEAAMAMLDWDTRQKLDQLAPTHFFSPAGTRHPIDYACD
DAPSVEVRVQALFGLDVHPMIGRTPLLLKLTSPAGRPIQSTRDLPGFWRGSWAEVAKEMK
GRYPKHRWPEEPWTEKPSLKTKNAFNRE
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
gtgagccctgacctgcccatcaacgccgtgctgcccgatattgcgggcgccctggcgcgc
gacggtgctgcggtcctcgtcgctcctccgggggctggcaagaccaccgccgttgccccc
gcactgctcgatgaggaatggtgttctgggcagatcatcatcacctccccccgccgtgta
gcggcgcgcgcggccgcagaacggatggcggagatgatgggcgaggaggtgggcggaacg
gtcggatacctcacccggctggacagcaaatcgtcttcccgcacacgcattctcgtcgtg
accgaagctatcctcgtcaaccggctggtggatgagccggacctccccggcatatcggca
atcctgttcgatgaggcgcatgagcggcatctcgacagcgaccttggcctcgccctcgca
atcgagagcagggaagtcttgcgcgaggatatacgcattctcgtaatgtcggccacgata
gatggtacgcgatttgccggtctgctgggcgatggggccacggtcgtcgaaagcgaaggt
cggagccatccgctcgagatacgttggttgggcagcaatcctgcgctttcgatcgaggac
gaggttgcaaccggcataatgacggcatggcgcgaacaggcaggcgatattctcgccttc
ctccccggcgttcgcgagatcgagcgcgtgcgcgaaaggctggccgcgagattgcccgat
actccgatcctgccgcttcacggacaggtcgaaccggcgggccagcgcgccgcgatccgc
cgcgatgcaaatggtcgcaggcggattgtgcttgcgaccgcgattgccgaaacctcgctt
acgctcgatggcgtttcggtcgtggtcgacagtggtcttgcgcgttatgccgagttcgat
cgggccgccgggacgacccatctcgtcacccggcgggccagccaggctgcagcgacccag
agggccgggcgggctgcgcgtcaggggccgggcgtcgcctaccgcttgtgggaagagggc
ggacacgcgggaaggcctgaattcgcaccgcccgaaattgccatcgccgacctcgctccg
cttgtcctgaagctcgccaaatggggcagcaccgatcctgcggccatggcgtggctcgat
ccaccgcccgaagcatcgatcgaagccgcacgcgacaatctccgctcgctcggagcactc
gacgaggcggggcggatcacgcagtggggcgaggcgatcgcatccatgccgatggcgccg
gaccatgccgcagcaatcctccacggcgcgcgcgccggatgtgcggaagatgccgcgcgg
ctggtgatgctgcttcaggaaaggggattgggcggtcctggtgaggacctctccgctcgt
ctcgcgcgctggcgcagcgacaagacgaaacgcgcccaaagcgcggaccggattgccagg
cgttgggccacaatggcgcaggagaggtccggcaagggcgattgcccggcgcgttcggcg
gaggaatgcctcgcccttgcgcgtcccgatttcctcgcgaaacggcgcgatgcgtcgggg
gaacgctggataagcgcgggcgggcgcggcttcgtcctcgaccctgcatctccactggca
ggatcagactggctcgtcgtcctcgatgcacaggggcaagcaagaggcgcacggataacc
tcagcagttccgatcgacgcttcacggatcgaagcgctgttctcgaatcgcatcgaggat
cgatcgatagcgcgctggaataacacggaaaaacgcgcggaatcccgcagggaaaagcgg
ctgggcgcgatcacccttgcacgcggccccgacgccaaccccgatccggcgacccttgtg
gacatccttgttgaaaaggcgctggaaagcctgggggaaatctttccagcgggcttcttg
gcaagggccaactttgccgggatcgaggcgctttcggaggcggcccttcgcgagaatgcc
tcgctctggcttgcgcctttgctggagggacgccgcgaccacgcattgccgcccgccaga
tacgccgaggcggcgatggccatgctcgattgggatacacggcaaaagctcgaccagctt
gcgccgacgcatttcttttcgcccgccggtacgcggcacccgatcgactatgcctgtgac
gatgcgccaagcgtcgaggttcgggtgcaggctcttttcggtctcgatgttcacccgatg
atcggacgcacgccgctcttgctgaaactgaccagtcccgccggtcgccctatccaatcg
acccgcgacctgcccggtttctggcgcggcagctgggccgaagtggccaaggagatgaag
gggcgctaccccaagcatcgttggcccgaggaaccttggaccgaaaagccgagcctcaag
accaaaaacgccttcaatcgcgagtaa
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