Erythrobacter sp. THAF29: FIU90_08810
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Entry
FIU90_08810 CDS
T06318
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erf
Erythrobacter sp. THAF29
Pathway
erf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU90_08810 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erf03019
]
FIU90_08810 (rhlE1)
Enzymes [BR:
erf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU90_08810 (rhlE1)
Messenger RNA biogenesis [BR:
erf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU90_08810 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QFT77638
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All DBs
Position
1809408..1810838
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AA seq
476 aa
AA seq
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MTHFSDLGLSQPVLQALELKGYDTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPG
IDRLRESDNRIPFKSCRMLVLAPTRELATQIAASAKDYGALAGLKVQVIVGGTSVNKDRN
KLHRGTDILIATPGRLLDLIDQKAFNLAGVEVLVLDEADQMLDLGFIHALRRINQLVPKE
RQTLFFSATMPKQIKELVSGYCTDPVQVSVTPAATTAERIDQYLFMVQQDEKQALLELIL
SGRHPVPGEFERVLIFTRTKHGADRVVKKLAQKGIEANAIHGNKSQPQRQRALDQFRRGK
VNVLIATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGIAIAFCAEDERA
YLKDIQRTTDAELERLDLPENFRAVVEGVGPTKPAPRGATRVSKKKIRPKLLGGKKPARK
PASETQGDQQARKSAGKPKHKHQARKGRPNRPGDGRPGGNRRAGGGNRSRRRSLHA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgacacatttctccgatctcgggctttcgcagcccgtactgcaggcgctcgagctgaaa
ggttacgacacgcctacccccatccaggaacaggcgatcccgccggtgctcgaaggccgc
gaccttctcggtatcgcgcagactggcaccggcaagacagcagccttcatgctgcccggt
atcgaccggctgcgcgagagcgacaatcgcatcccgttcaaatcatgccgcatgctggtt
cttgccccgacgcgcgaactggcgacccagatcgctgcgagcgccaaggactacggcgcg
ctggcaggcctcaaggtgcaggtgattgttggcggtacctcggtcaacaaggaccggaac
aagctgcaccgcggcaccgatatcctgatcgcgacgccgggccgtttgctcgacctgatc
gaccagaaggctttcaatctagcaggcgtcgaagtgcttgtgctcgatgaggccgaccaa
atgctcgacctcggatttatccatgctctcaggcgcatcaaccagctcgtccccaaggag
cgccagacgctgtttttcagcgcgaccatgcccaagcagatcaaggaactggtgagcggc
tattgcaccgatccggtgcaggtcagcgtgacgcctgccgcgaccacagcggagaggatc
gatcagtaccttttcatggtccagcaggatgagaagcaggcgctgctcgaattgatcctt
tcaggccgtcacccggttccgggtgaattcgagcgtgtgctcatcttcacgcggacgaag
catggtgccgatcgcgtcgtgaagaagctggcccagaagggtatcgaggcgaacgcgatc
cacggcaacaaatcgcagccgcagcgccagcgcgcgctagaccagtttcgccgtggcaag
gtcaacgtcctgatcgccaccgacgtcgccgcgcgcgggatcgacattccgggcgttagt
cacgtgctgaactacgagttgccgaatgttcctgaacaatatgtccaccgcatcggccgg
accgcgcgtgcgggccgcgatggcatcgcgatcgcattttgtgccgaggatgagcgcgcc
tacttgaaagatatccagcgcaccaccgacgccgagctcgaacggctcgacttgcctgag
aatttccgggctgtggtcgaaggcgtgggcccgaccaagccggcgccgcgcggtgccaca
cgggtttcgaaaaagaagatcaggccaaaactgctgggcggtaagaagccagcacgaaag
cccgccagcgaaacgcagggcgatcaacaggcacgcaaatcggcgggaaagcccaagcac
aagcaccaggcgcgtaaaggccggccgaaccggcccggtgacgggcgacccggcggcaat
cgccgcgcaggcggcgggaatcgctcgcgtcgccgctccttgcacgcctga
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