Erythrobacter sp. THAF29: FIU90_13420
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Entry
FIU90_13420 CDS
T06318
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
erf
Erythrobacter sp. THAF29
Pathway
erf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU90_13420 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erf03019
]
FIU90_13420 (pnp)
03016 Transfer RNA biogenesis [BR:
erf03016
]
FIU90_13420 (pnp)
Enzymes [BR:
erf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FIU90_13420 (pnp)
Messenger RNA biogenesis [BR:
erf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIU90_13420 (pnp)
Transfer RNA biogenesis [BR:
erf03016
]
Prokaryotic type
tRNA degradation factors
FIU90_13420 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
S1_2
Borrelia_REV
DUF4142
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QFT78543
LinkDB
All DBs
Position
complement(2738031..2740316)
Genome browser
AA seq
761 aa
AA seq
DB search
MFDTKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGYRNGEYELNPSLDKALDEEGRLDLV
VAATNDAVMMVESEAKELSEEEMLGAVMFAHEESKKVIGAIVELAEQAAKDPWDLDPVED
KSAKMDKLRAAIGADLEAAYKLTNKAERQDAVNAAREKAREAFADLAESDPAEYLGTLKL
VKKLESDIVRGSIIKDGTRIDGRKLDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTL
GTKDAEQMIDGLEGLSYNNFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVMP
DAEEFPYTIRVLSDITESNGSSSMATVCGGCLAMMDAGVPVKRPVSGIAMGLILEGDDFA
VLSDILGDEDHLGDMDFKVAGSEEGITSLQMDIKVAGITKEIMEKALEQAKAGRAHILGE
MAKALTGARSEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIK
ISSSNLDEIEAAKKWIEGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKN
ERVEKPSDVVSEGDEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPPREPRGDKGGR
GGRGGDRRGGRGGRGPRREGGGNRDGGGNDGPAAMPDFLKD
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacacgaaaaccgtatcgctggagtggggcggaaaaaccctcactctggaaact
ggccgtattgcccgtcaggctgacggcgcggtcctcgccacctatggcgaaactgttgtt
ctttgcgcggtcaccgctgctaagagcgtgaaagaggggcaggatttcttcccactcacc
gtccactaccaggaaaagttttccgcagccggccgcatccccggtggcttcttcaagcgc
gaaggccgcgcgaccgagaaggaaacgcttaccagccgtcttatcgaccgcccggtgcgc
ccgctcttcccggaaggattctacaacgagatcaacgttatcgcgcaggtcctgtcctat
gacggtgagaccgagcccgatatcgtcgccatgatcgctgcgagcgcggcgctcaccatc
agcggcgttcccttcatgggtccgatcggcgcggcgcgcgtcggctatcgtaacggcgaa
tacgaactcaacccgagcctggacaaggcgctcgacgaagagggccgcctagacctcgtc
gttgccgcaaccaatgatgcggtgatgatggtcgaatccgaagccaaggagctttcggaa
gaagagatgctcggcgccgtcatgtttgcgcacgaggaatcgaagaaggtaatcggcgcg
atcgtcgaactcgccgaacaggcagccaaggatccctgggatctcgatccggtggaagac
aagtcggccaagatggacaagctgcgcgctgccatcggtgcagacctcgaggccgcttac
aagctcaccaacaaggctgagcgtcaggacgctgtaaatgcggcccgcgaaaaagcgcgc
gaggcttttgccgacctcgccgagagcgatccggccgaatatctcggcacgctcaagctc
gtgaagaagctggaaagcgatatcgttcgcggctcgatcatcaaagatggaacccgcatc
gacggtcgcaagctcgacgaggtccgcccgatcgaggccatggtcggcctgctgccgcgc
acacacggatcggcgttgttcacccgcggtgaaacgcaggcgatctgcaccaccacgctc
ggaaccaaagacgctgagcagatgatcgacgggctggaaggcctgtcgtacaacaacttc
atgctgcactataacttcccgccctattcggtcggcgaagtgggccgcttcggctttacc
ggtcgtcgtgaaatcgggcacggcaagctcgcatggcgcgcgctgcacccggttatgccg
gatgctgaggagttcccgtacacgatccgcgtgctttcggacattacagagtccaatggt
tcgtcttcgatggcgaccgtttgcggcggctgtcttgcaatgatggacgctggcgttccg
gtgaagcgcccggtttcgggcatcgccatgggtctcattctcgagggcgacgattttgca
gtcctttcggacatcttgggtgacgaagatcacctcggcgacatggacttcaaggtggca
gggtctgaagaaggcatcaccagcctccagatggacatcaaggtcgccggcatcaccaag
gaaatcatggaaaaggcgctcgagcaggcgaaggcaggccgcgcgcatatccttggcgag
atggccaaggcgctgaccggcgctcgcagcgaagtttcgaagcacgcaccgcgtatcgag
acgatgcagatcgacaagtcgaagatccgcgacgtcatcggaacgggcggcaaggtgatc
cgcgagatcgtcgctgaaaccggcgcgaaagtggacatcgacgatgaaggcgtgatcaag
atctcgtccagcaacctcgatgaaatcgaagccgcgaaaaagtggatcgaaggcatcgtc
gaggaagccgaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgatttcggc
gcgttcgtgaatttcatgggcggcaaggacggcctcgtccatgtctccgaaatgaagaac
gagcgggtcgagaagccgtcggacgtcgtttccgaaggagacgaggtcaaggtcaaggtc
ctcgagatcgacaatcgcggcaaggtccgcctgtcgatgcgcgttgtggatcaggaaacc
ggcgaagagctcgaagacacccgcccgccgcgcgaaccgcgcggtgacaagggcggtcgc
ggcggacgcggcggcgatcgccgcggtggccgcggaggtcgtggcccgcgccgtgaaggc
ggcggcaatcgcgacggcgggggcaatgatggccccgcggcgatgcccgactttctgaag
gactaa
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