Ehrlichia ruminantium Gardel: ERGA_CDS_07590
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Entry
ERGA_CDS_07590 CDS
T00232
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
erg
Ehrlichia ruminantium Gardel
Pathway
erg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
erg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERGA_CDS_07590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erg03400
]
ERGA_CDS_07590 (mfd)
Enzymes [BR:
erg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERGA_CDS_07590 (mfd)
DNA repair and recombination proteins [BR:
erg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ERGA_CDS_07590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_19
GTP-bdg_M
Motif
Other DBs
NCBI-ProteinID:
CAI28211
LinkDB
All DBs
Position
1210255..1213626
Genome browser
AA seq
1123 aa
AA seq
DB search
MNTVNYISNIPHTLEAFAIAEMYNKGLINSAIYITNQEDSLYQLSSIFQFYITNLKVIVV
PAWNLIPYKKNSPNNLIMAERIKSLYSLTHTHNNTTTTPYIIITTTNAVIQKVLPRNIIS
QIVFKITVQENLPIHYIKNYLITHGYTQYSTVQDIGEFCVNNNTIDIFPITYPNPIRIYL
NNDHVESIKTFDCKTQLIHTDSSINEIFIYPTSEVIKQQKNIEQFLKIYKTKANQDKHLL
NTIVSKKKYIGEENFLPLFYEEELEDIFNYIQDIQLIFSNKIIDQISQYNNNLRSNYKNS
LYYQIAPDQLYITLENFYSITKQLKKIIFLTVDELNYVNIDIQNPQCNVTKIKKIPNFKA
LAVQEQTDVFEIFAQYIKSQHHAYKLLIACHSVETLEYIQSKLATCQIKLNKINNYNEIN
NTYNIAILQINNSFSTESTIIVTEDDLLSTTSTTSISDIINYTIDLNIGDIVIHKDYGIG
KIAKLETIKVLDNYHDFLKIEYYNNDKLFLPVENINLITRYSNQDSNITLDRLGSTSWQQ
RQTKLKNHIQKIAKELIKIEAARQLMQGTPFLPNNIYKNFCDEFAYTETTDQLQAIQDIE
NDLSSGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPTTLLCKQHFTVFTERF
KNFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQDVNFFNLSLVIIDEEQ
QFGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIKTPPKNRLPVITYTIH
YTDNTIKNAIIHEYERGGRTFYVCPQINNIKNINDNLIRLLPDIKIGIAHGQLPSHELEN
VMNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGLAQLYQLKGRVGRSNIKGYA
YFILSDNINNISERRLEIIRSIDSINSGFALSLHDMDIRGFGNLIGEEQSGNIKDIGIEL
YQQMLEEELNTNNQCYKNLHHININININIRIPEHYISDIGLRMNMYKRIGNLRTKEEID
SFHIALIKKFGKLPDEVENLLDIIYIKQLCIPIGIYEIEQVKNIVNFKIHNNVTFPKMVL
DYLIHNPLILKIQNNSISMLVNNISSRITKLIIHHLKKITSLL
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgttaattatatctctaatataccacatacacttgaagcatttgctatagca
gaaatgtacaacaaaggactgattaactctgcaatatatataacaaatcaagaagattct
ttatatcaattatcatctatttttcaattctacattacaaaccttaaagtaattgtagtc
cccgcatggaacttaataccatataaaaaaaattcacctaacaatctaataatggcagaa
cgaataaaaagcttatactctttaactcatacacataataatactactactactccatat
atcatcataacaacaactaatgcagtcatccagaaagtactgcccaggaacataatatca
caaatagtatttaaaattacagtacaagaaaatcttcctatacactacattaaaaactat
cttataactcatggatatactcaatactcaacagtacaagatattggtgaattctgtgtc
aataacaacaccatagacatatttcccataacatatccaaatcctataagaatttactta
aataatgatcacgtagaatcaattaaaacatttgattgcaaaacacaattaatacataca
gattcttctataaatgaaatattcatttacccaacttctgaagtaataaagcaacaaaaa
aatatagaacagttccttaaaatttataaaacaaaggctaatcaggacaaacacttgtta
aacacaatagtctccaaaaaaaaatatataggagaagaaaatttcttacctttattttat
gaagaagaattagaagatattttcaattatattcaagatatacagttaatatttagtaat
aaaataattgatcaaatatcacaatataataacaacctaagatcaaattataaaaattca
ctgtattatcaaatagctccagatcaattatatataactcttgaaaacttttactctatt
actaaacaattaaaaaaaattattttcttaacagtagatgaactaaattatgttaacatt
gacatacaaaacccacaatgcaacgttacaaaaatcaagaaaatacctaattttaaagca
ttagcagtacaagaacaaaccgatgtatttgaaatctttgcacaatatattaaaagtcag
catcacgcatataagctattaatagcatgtcactctgtagagaccttagaatatatacaa
agcaaacttgcaacatgtcagataaaactaaataaaataaataactataatgagatcaat
aacacctataacatagctatattacaaataaataacagtttctctaccgaatccacaata
atagtaacagaagatgatttacttagcacaacgtctacaacaagtatatcagacattatc
aattataccatcgatttaaatataggtgacatcgtaatacacaaagactatggcattggc
aaaatagcaaaacttgaaactattaaagtattagataactatcacgatttcttaaaaata
gaatactacaacaacgataagctatttttacctgtagaaaacattaatttgataactagg
tatagtaatcaagatagtaatattacactagataggctaggaagcacatcatggcagcaa
cgccaaactaaattaaaaaaccatatacaaaaaattgcaaaagaactaattaaaatagaa
gcagcaagacaattaatgcagggcacaccttttctacctaacaatatttataaaaatttc
tgtgatgaatttgcttatactgaaacaacagatcagctacaagctattcaagatatagag
aatgacctgtccagtggaaaaataatgaatagacttatatgtggagatgcaggatttgga
aaaacagaagtagcattaagagcagcatttttagtagctataaaaaattatcaggttgca
gtaatagtaccaaccaccttattatgtaaacaacattttactgtatttactgaaagattt
aaaaacttcccaaatataaaaattcaacaattatctaaaattgtgaataaacatgaaata
aaaaaaatcaaagaaaacatatcatatggacacacacatattattataggaacacatgct
atattatcacaagacgtaaatttctttaacttaagcctagtcattatagatgaagagcaa
caatttggagttaaacaaaaagagttgctaaagaaaattaaagcaaatgtccatgtactg
tcactatctgcaacaccaataccaagaacattacacatgtccctatgtggtataaagaat
ttcagtttaataaaaacaccaccaaaaaacagactaccagttataacatatacaattcat
tacacagacaacacgatcaaaaatgctataattcatgaatacgaaagaggtggaagaaca
ttttatgtatgtccacaaattaacaacataaaaaatattaatgacaatttaattagatta
ttaccagatatcaaaataggaattgcccatggtcaattgccttcccacgaacttgaaaat
gttatgaatgatttccttgatggtaaatttacagtattacttacaacatcaatcatagaa
tgcggcttagatattccacatgctaacacaattataatacacaatgctgacatgtttgga
cttgcacagctctatcaattaaaaggtagagtaggacgtagtaatattaaaggttatgca
tattttatactatcggataacataaacaatatatcagagagaagactagagatcatacga
tcaatagattccataaactcaggatttgcgttatcacttcatgatatggatatcagagga
tttggtaatttaattggagaagaacaatcaggaaatataaaagacataggtattgagtta
tatcaacaaatgttagaagaagagttaaatactaataatcaatgttataaaaatcttcat
catataaatatcaatattaatataaatattagaattccagaacattacattagtgatata
ggattaagaatgaacatgtataaaagaataggtaatctaagaacaaaagaagagatagat
agttttcatatagcacttattaaaaaatttggcaaattaccagatgaagtggagaattta
ttagatatcatatatataaaacagctatgtatacccattggcatttacgaaattgaacaa
gtaaaaaatattgtaaattttaaaatacacaataatgtaacttttccaaaaatggtatta
gattatttaatacacaatccattaattttaaagatacaaaacaacagcatttcaatgtta
gttaataacatctcatcacgtattacaaaactcataatacatcatctaaaaaaaataaca
tcactgctataa
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