Erysipelothrix piscisicarius: EEI45_05330
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Entry
EEI45_05330 CDS
T05733
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
eri
Erysipelothrix piscisicarius
Brite
KEGG Orthology (KO) [BR:
eri00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EEI45_05330 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eri03021
]
EEI45_05330 (rpoD)
Transcription machinery [BR:
eri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EEI45_05330 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DAXX_hist_bd
TAD2
MPM1
Motif
Other DBs
NCBI-ProteinID:
AZK44246
UniProt:
A0A3S8RMT7
LinkDB
All DBs
Position
1050036..1051418
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AA seq
460 aa
AA seq
DB search
MAAKKLKTLEEVKESFLKQYEKKRVLLNDDVEKAIDHLNLSDDDSEELFEWFTEKGIILS
DDEDDIDEEVMLEAGEPDVDDDFISDESEEEDEIFDDSLNKVDLSSYENELTSANMVRIN
DPVKMYLKEIGRVNLLDAKDEPEIARRLQEGEQAKEFIINKYKEIVDPAITDEELAERLT
ENQIGYFFDDFEAYLTDNGDEENLAFLTNWVATYYDGLEARRILISANLRLVVSIAKKYV
GRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVH
MVETINKLTRIQRSLVQTLGREPTAEEIAAEMENITPEKVREIQKIALDPVSLETPIGEE
DDSHLGDFIEDKDALSPDEYANNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLE
EVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDFVDKR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaaaaattaaaaacattagaagaagttaaagagagttttctaaaacaatat
gagaaaaagcgtgttctattaaatgatgatgtagaaaaggcgattgatcaccttaatttg
agtgatgatgattctgaagagctttttgagtggtttacagaaaaaggcattattctcagt
gatgatgaagatgatattgatgaggaggtaatgcttgaagctggtgagccggatgtcgat
gatgattttattagcgatgagtcagaagaggaagatgaaatctttgacgattcactgaat
aaagttgaccttagctcatacgaaaatgaattaaccagtgccaacatggttcgcattaat
gaccctgttaagatgtatctcaaggaaattggtcgagttaatcttttagatgctaaagat
gaacctgaaattgcacgccgacttcaagaaggggagcaagctaaagaatttatcattaat
aagtataaagaaattgtggatccagcaattacggatgaggaacttgcggagcgtctaacg
gaaaaccaaattgggtacttttttgatgatttcgaagcgtaccttacggataacggtgat
gaggaaaatcttgcctttttaactaactgggttgcaacttattacgatgggttggaggcg
cgacgcatcctaatctctgcaaaccttcgtttggttgtttcaatcgctaaaaaatatgta
ggtcgtggaatgttattcttagacttaattcaagaaggaaacatgggtcttgttaaagca
gttgaaaagtttgactatacaaaaggctttaaattttcaacatatgcaacatggtggatt
cgccaggccattactcgagcaattgcagaccaagcacgtacgattcgaatcccagtacac
atggtcgaaacaattaataaattaacccgaattcaaagatcactagttcaaacgcttggt
cgtgaaccaacagctgaagaaattgcagctgaaatggaaaacattacccctgaaaaagtg
cgtgaaattcagaaaattgctttagatccagtttcattagagacaccgattggtgaagaa
gatgattcgcatcttggtgattttattgaagataaagatgcattatcaccagatgagtat
gcgaacaatcaacttcttaaagaagagattaaaatggttcttgaagggttaacggaacgg
gaagaaaaagtcttacgactcagattcggtttagaagatggacgtactcgtacgttagaa
gaggtcgggaaagagtttaacgttacacgtgaacgtattcgtcagattgaagccaaagca
cttcgtaagttgaaacatcctacacgatcaaaacgcttaagagactttgtagacaaacga
taa
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