Erwinia sp. Ejp617: EJP617_21160
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Entry
EJP617_21160 CDS
T01935
Symbol
hopD
Name
(GenBank) HopD, DNA-binding protein HU-beta (Synonym HupB)
KO
K03530
DNA-binding protein HU-beta
Organism
erj
Erwinia sp. Ejp617
Brite
KEGG Orthology (KO) [BR:
erj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erj03032
]
EJP617_21160 (hopD)
03036 Chromosome and associated proteins [BR:
erj03036
]
EJP617_21160 (hopD)
03400 DNA repair and recombination proteins [BR:
erj03400
]
EJP617_21160 (hopD)
DNA replication proteins [BR:
erj03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
EJP617_21160 (hopD)
Chromosome and associated proteins [BR:
erj03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
EJP617_21160 (hopD)
DNA repair and recombination proteins [BR:
erj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
EJP617_21160 (hopD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Arteri_nsp7a
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ADP11797
LinkDB
All DBs
Position
2330585..2330857
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSQLIEKIAADADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERPG
RNPQTGKEITIAARKVAGFRAGKELREAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagtcacagttaatcgaaaaaattgctgcagatgccgatgtttctaaagccgca
gtgggacgtatactggaagcttttattgacacagtaactaaatcactacaggctggcgaa
gaagtggcactgcttaatttcggcaccttttcggtacgcgaacgcgctgaacgccctggc
cgtaacccgcaaaccggcaaagagatcactatcgcagcgagaaaagtggcaggtttccgt
gccggtaaagaattgagagaagccgttaaataa
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