Erwinia sp. Ejp617: EJP617_25670
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Entry
EJP617_25670 CDS
T01935
Symbol
rne
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
erj
Erwinia sp. Ejp617
Pathway
erj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJP617_25670 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erj03019
]
EJP617_25670 (rne)
03009 Ribosome biogenesis [BR:
erj03009
]
EJP617_25670 (rne)
Enzymes [BR:
erj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EJP617_25670 (rne)
Messenger RNA biogenesis [BR:
erj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJP617_25670 (rne)
Ribosome biogenesis [BR:
erj03009
]
Prokaryotic type
rRNA processing factors
EJP617_25670 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADP12248
LinkDB
All DBs
Position
complement(2802094..2805714)
Genome browser
AA seq
1206 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEALQWD
LGFRIKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLALSI
LRLIEEEALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQTPH
YSVLRVRSGEEIQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPALQE
AVAEPAAPKAAVKTPAPASAQPGLFSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAEAPA
PRGERRNHRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEAREG
REDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSLVQE
EKIPEPVVENVPAPEVLEESVQVMPRRKQRQLNQKVRIETAEQTAARSFAPQESEPAVPA
VPAVTQPVVETEDHDDRDGNSIPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAHAA
ASPESASGKVWISYPVAQVSDHETHEEHPHSVVPAYGHADIAQRDALDTAATVAMHASVT
ESVAAPAIEAAPAVEAAPAVEAAPAVEPAPAVESAPVVKPAPAVEAAPAVEPAPAVEAAP
AVEAAPAVEAAPAVKAAPAVEAAPAVEAAPAVEPAPAVEAAPAVEPAPAVEQAEAVQVVE
AASVHLPEITPVTAEDTAAIDAPVNQQPAVISAVDEAVAAETAAEAVPAEEVKPEPAEAV
TERSVDVPAQQAAASRVAPVEVSTEVEQQVAGVLNAAEASAQQRSAAAEPHAPVPVRDEP
VDAATVQAGRYKHHATAPMTKAPAPVYQPEPARHSDWVRPAFNFEGKGAAGAHAASHQAT
APATRP
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgctgataaacgcgactcagcaagaagagttgcgtgttgcccttgtcgatggacagcgc
ctgtacgacctggatattgaaagcccgggacacgaacagaaaaaagccaacatctataaa
ggcaagatcacccgtattgaacccagtcttgaagccgcatttgttgattatggcgccgaa
aggcatggtttcctgcctctgaaagaaatatcccgcgaatacttcccttctcattaccat
gctcacggccgtcctaatatcaaagatgtgctgcgtgaaggccaggaagtgattgttcag
attgataaagaagagcgtggcaataaaggcgcagctctgaccacctttatcagtctggcg
ggcagttatctggtattgatgccgaataacccgcgtgctggcggcatttcgcgccgcatt
gagggtgatgaccgtactgaactgaaagaagcgctctcttcgcttgagctacccgacggc
atgggcctgattgtgcgcactgcaggcgtgggcaaatccgccgaagccttacagtgggat
ttaggtttccgcatcaagcattgggaagcgatcaagaaagccgctgacagccgcccggct
ccgttcctgatccatcaggaaagcaacgtcatcgtacgtgccttccgcgactatctgcgc
caggacattggcgaaatcctgattgataacccgaaagtgctggagctggcacgccagcat
atcgccgcactgggacgtccggatttcagcagcaaaatcaagctttataccggtgaaata
ccgctgttcagccattaccagatcgaatcgcagattgaatccgctttccagcgtgaagtg
cgcctgccatcaggcggctcgattgttattgataccaccgaagcgctgaccgccatcgat
atcaactccgctcgcgccacccggggcggtgacatcgaagagacagcatttaacaccaac
cttgaagctgccgacgagattgcccgccagctgcgtctgcgtgacctcggtggcctgatc
gtcatcgactttatcgacatgaccccggttcgccatcagcgtgcggttgaaaatcgcctg
cgcgaagcggtacgccaggatcgtgcgcgtatccagatcggccatatttcccgtttcggc
ctgctggaaatgtcacgtcagcgtctcagtccgtcactgggtgagtccagccatcacgta
tgcccgcgctgtagcggcaccggcactattcgtgataatgaatcgctggcgctctctatt
ctgcgcctgattgaagaagaagcgctgaaagagaataccaaagaagtccacgccatcgtg
ccggtacaggtggcctcctacctgctgaacgagaagcgtgatgcggtaagcgccattgag
aaacgccagggcggcgtacgtgccattatcgtaccaaacgataatatgcagactccgcac
tattcagtactgcgcgttcgcagtggcgaagaaatccagaccttaagctatcacctgccg
aaactgcatgaagctgaaatggcgctgccttctgaagaagaacatgccgagcgcaaaagc
ccggagcagcctgccctcgccgcttttgtgatgccagatgcgccacctgcactgcaggaa
gccgttgctgaacccgccgcgccaaaggccgctgttaaaaccccagcccctgcttcagcc
cagccgggtctgtttagccgcatcgttagcagcctgaaaaaactgtttgctgcgcctgag
aagccagcggaacagccacagccgccggtggctgaagagaaaagcgctgaagcaccggct
ccgcgcggcgagcgtcgtaaccatcgccgccagaataaccgtcgtgaccgtaacggcgat
cgcaacgagcgtaatgatcgcagcggtgaacgcaacgatcgcagcgcagagcgtaacgaa
cgcagcgcagcgcagagcgaacgcgcaccgcgtgagcgtaataacgaagcccgcgaaggt
cgtgaagaccgccgtaataatcaacgtcgcaatcctcagcagaccgatgcacgtagtgag
cgtatggtgccggacgagtttgagcgcagtgagaccactcagccgcgccagccacgtcag
gatcgccagcgtcggcgttctggtcaaaaccaggaagaaaaacgttctctggtgcaggaa
gagaagatccctgagccagtagtcgaaaacgtgccggctccagaagttctggaggagagc
gtacaggtgatgccgcgccgtaaacagcgccagctaaaccagaaagtgcgtatcgaaacc
gctgaacagactgcagcccgttcgttcgcgccacaagagagtgaaccggctgtgccggct
gttccagccgttacccagcccgtggtggaaacggaagatcacgatgatcgcgatggcaac
agtatccctcgccgctctcgccgctctccgcgccacctgcgggttagcggtcagcgccgc
cgtcgctaccgtgacgagcgctatccaacacagtcaccaatgccgctggcccacgccgcc
gcatcgccagaatcggcgtcaggtaaagtgtggatctcctatccggtagcccaggtgagc
gaccatgaaacccatgaagagcatccacattctgtggtgcctgcctacggtcatgcagat
atcgcccagcgggatgcgctggacacggcggcaaccgttgcaatgcacgccagcgtgacg
gaaagcgttgcagctccggcgattgaagcagctccggcggttgaagcagctccggcggtt
gaagcagctccggcggttgaaccagctccggcggttgaatcagccccggtggttaaacca
gccccggcggttgaagcagctccggcggttgaaccagccccggcggttgaagctgccccg
gcggttgaagcagctccggcggttgaagcagctccggcggttaaagcagctccggcggtt
gaagcagctccggcggttgaagcagctccggcggttgaaccagccccggcggttgaagca
gccccggcggttgaaccagctccggcggttgaacaggctgaagctgtacaggttgttgaa
gcagcgtcagtccatctgcctgagatcaccccggtaacggccgaagacactgcggctatt
gatgcaccggtcaatcagcagcctgctgtgatttccgctgtggatgaagcagtagcggca
gaaacggcagccgaagccgtcccggctgaagaagtgaagcctgaacccgcagaggctgta
actgagagatcggtggacgttcctgcacagcaggcagcagccagccgcgtagcccctgtg
gaagtcagcacagaggttgagcagcaggttgccggggtgctgaacgcggctgaagcatcg
gcgcaacagcgttcagcagcggcagaacctcatgcgccggttccggtgcgtgatgaaccg
gttgacgccgcgaccgtgcaggcgggtcgctataagcatcatgctaccgcaccgatgaca
aaagcgccggctccggtttatcagccagaacctgcacgtcacagcgactgggttcgtccg
gccttcaactttgaaggtaagggagcggcaggcgcgcatgcagccagccatcaggctacg
gctccggcaacccgcccgtaa
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