Erythrobacter sp. KY5: CD351_00850
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Entry
CD351_00850 CDS
T05511
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
erk
Erythrobacter sp. KY5
Pathway
erk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CD351_00850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erk03021
]
CD351_00850 (rpoC)
03400 DNA repair and recombination proteins [BR:
erk03400
]
CD351_00850 (rpoC)
Enzymes [BR:
erk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CD351_00850 (rpoC)
Transcription machinery [BR:
erk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CD351_00850 (rpoC)
DNA repair and recombination proteins [BR:
erk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CD351_00850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
AWW72968
LinkDB
All DBs
Position
complement(182705..186982)
Genome browser
AA seq
1425 aa
AA seq
DB search
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWYLKSL
PSRIGLLLDIQLKQLERILYFESYVVIEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAD
IGAEAVKVMLMDLDLEQEREDLLEELATTKSALKPKKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEYLENEDGSKVEKLPRF
ADMAEVHHALETKAVTLHTKILARVPQADEDGNIVMKRFETTPGRMLIGECLPKNHKVPY
DIINRLLTKKDIGDVIDEVYRHTGQKDTVLFADAIMVLGFRNAFKAGISFGKDDMIIPDA
KIPLVEETKSLVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMEEIKAQPIDDD
GKQAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYF
NSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEDDCKTENALEMRAIVQGGSVIA
SLGERILGRTVAEDILNAATDEVIVKAGTLIDEPMVKLIEEAEVQSAKIRSPLVCESDQG
VCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAIS
DGKIELRDMPTITDKKGRILSLARNGEIAVIDAEGREREMHKVPYGTVLMFKHGAKVKEG
DRLAEWDPFTLPIITEQSGVVKYQDLVEGMTLEEQTDDATGIAQRVVTENRATGRKKKEE
LRPRMTLLGEGQTDADETEAQRYMLAPGTTLSVEDGQQVEAGDILARASREAAKTRDITG
GLPRVAELFEARLPKDMSVIAKISGKIEFVREYKAKRKIAIVPEEGDAVEYLIPKTKVID
VQEGDFVKKGDTLISGSPNPHDILEVMGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIV
RQMLQKVEITNGGDTVLLPGEQVDREEMDEANAKLGKGKQPAEGTPILLGITKASLQTRS
FISAASFQETTRVLTQASVEGKKDTLIGLKENVIVGRLIPAGTGAGMNRMRVTATSRDAA
LKAQWKKQQDALAAENASEPEPAADAVPSEEAMKAAMGGSGDAAE
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctggctaagccggaaaccttcgaccagatc
cagatcggcatcgcctcgccagagcgcatccgttcgtggtctttcggcgagatcaagaag
ccggagaccatcaactaccgcacgttcaagcctgagcgtgacggcctgttctgtgcgcgc
atcttcggtccggtgaaggactacgaatgcctgtgcggcaaatacaagcgcatgaagtac
aagggcgtcgtgtgcgaaaagtgcggcgttgaagtcaccgtcaccaaggtgcgccgtgag
cgtatgggccacatcgagctcgctgctcctgtcgctcacatctggtatctgaagtcgctg
ccttcgcgcattggcctcttgctcgacatccagttgaagcagcttgagcgcatcctctac
ttcgaaagctatgtcgtgatcgagccgggtctgaccccgcttgagaaattccagctgctg
accgaggacgaactgctcgaagcgcaggacgaatatggcgaagacgccttctctgccgat
atcggtgccgaagcagtcaaggtcatgctgatggatctcgaccttgagcaggagcgtgaa
gaccttctggaagagctcgcgaccaccaagtccgcactcaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcatcgattcgggcaaccgtcccgaatggatgatcctc
gaagtgatcccggtcatcccacccgaactgcgcccgttggtgccgctggacggtggccgt
ttcgcgacgtccgatctcaacgatctctatcgccgcgtgatcaaccgtaacaaccgtttg
aagcggctcattgagctgcgcgcgccggacatcattgtccgtaacgaaaagcgtatgctt
caggaagccgttgatgcgctgttcgacaatggtcgccgtggccgcgtcatcacgggtgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaaccttctgggtaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggatatcctggatgaagtcatccgcgagcac
ccggttctgctgaaccgcgctccgacgcttcaccgtctcggcattcaggcgttcgagcct
gtgctgatcgaaggaaaggccatccagcttcacccgctcgtctgctcggccttcaacgcc
gactttgacggtgaccagatggcggttcacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggttctgggtctctattacctctcgatggaacgtcaggaa
aagacgcctgagtacctcgagaacgaagatggctcgaaggtcgagaagctgccgcgcttt
gccgacatggccgaagtgcaccatgcgctcgaaaccaaggctgtcacgctgcacacgaag
atcctcgcccgcgttccgcaggccgatgaggatggcaacatcgtgatgaagcgcttcgag
acgacgccgggccgtatgctgatcggcgagtgtctgcccaagaaccacaaggtgccctac
gacatcatcaaccgccttctcaccaagaaggatatcggtgacgtaatcgacgaggtgtat
cgtcacacggggcaaaaggacaccgtgctgttcgccgacgccatcatggtgcttggcttc
cgcaacgcgttcaaggccggcatctccttcggtaaggatgacatgatcattcctgacgcg
aagattccgttggtcgaagaaaccaagagcctcgttgctgactatgagcagcagtatcag
gacggtctcatcacccagcaggaaaagtacaacaaggtcatcgacgcctggagccgttgc
ggcgaccaggtggccgacgccatgatggaggagatcaaggcgcagccgatcgacgacgac
ggcaagcaggcgcagatcaactcgatctacatgatgagccactcgggtgcgcgtggttcg
ccagcgcagatgaagcagctcgccggtatgcgcggcctgatggccaagccgtcgggtgag
atcatcgagaccccgatcatctcgaacttcaaggaaggcctgaccgttcttgaatacttc
aactcgacccacggcgctcgtaaaggcctcgcggataccgcactcaaaacggcaaactcg
ggttatctgacccgccgtctggtcgacgtgtcgcaggactgcgtcatcgtcgaagatgac
tgcaagaccgagaacgcgcttgaaatgcgtgcgatcgttcagggcggtagtgtcatcgct
tcgctgggtgagcgtatccttggtcgtacggttgccgaagacatcctcaacgcagccacc
gacgaagtgatcgtcaaagccgggacgctgatcgatgaaccgatggtcaagctgatcgag
gaagccgaagttcagtccgcaaagatccgttcgccgctcgtttgcgagagcgatcagggt
gtctgcgcgacctgctacggccgtgaccttgcgcgcggtactccggtgaatatcggcgaa
gctgtcggcgttatcgctgcacagtcgatcggtgagccgggcacgcagctgaccatgcgt
accttccacatcggtggtgcggcgcagctcaacgaaacctcgcatcttgaagccatctcg
gacggcaagatcgaacttcgtgacatgccgacgatcaccgacaagaagggccgcatcctc
tcgctcgcccgtaacggtgagatcgccgtgatcgacgccgagggccgtgagcgtgaaatg
cacaaggtgccttacggtaccgtgctcatgttcaagcatggtgcgaaggtgaaggaaggc
gaccgtctcgctgagtgggacccgttcacccttccgatcatcaccgagcaatcgggcgtc
gtgaagtatcaggacctggtcgaaggcatgacgctcgaagagcagactgacgatgcaacc
ggtatcgctcagcgtgtggtgaccgaaaaccgcgcaaccggccgcaagaagaaggaagag
ctgcgtccgcgcatgactcttctcggcgaaggtcagaccgatgccgacgaaaccgaagcg
cagcgctacatgctcgctccgggcacgacgctttcggtcgaggatggtcagcaggtcgag
gccggtgacattcttgcacgtgcttcgcgtgaagccgccaagacccgcgacatcaccggt
ggtctgccgcgtgttgctgaactgttcgaggcgcgtctgccgaaggacatgtcggtcatc
gccaagatttcgggcaagatcgaattcgttcgcgaatacaaggcgaagcgcaagattgcg
atcgtgcccgaggaaggtgatgcagtcgagtacctgatccccaagaccaaggtgatcgac
gtgcaggaaggcgacttcgtgaagaagggtgacaccctgatttccggttcgcccaacccg
cacgacatcctcgaagtcatgggcgtcgaggcactggccgaatatctcgtcaacgagatt
caggaagtctaccgactgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtt
cgccagatgctgcagaaggttgagatcaccaatggcggcgacaccgtactgcttccgggc
gaacaggttgatcgcgaagaaatggacgaagccaatgccaagctcggcaagggcaagcag
cccgctgaaggcacgccgatcctgctgggcatcaccaaggcgtcgctgcagacccgcagc
ttcatctcggcagcctcgttccaggaaacgacgcgcgttctcacccaggcctcggtcgag
ggcaagaaggacacgctgatcggtctgaaggaaaacgtgatcgtgggccgtctcatcccc
gccggtaccggcgcgggcatgaaccggatgcgcgtcaccgcgaccagtcgcgacgctgcg
ctcaaggctcagtggaagaagcagcaggatgcgctcgccgcagaaaatgcgtccgagcct
gagccagcagccgacgcggttccttcggaagaagcgatgaaggcagccatgggcggctct
ggagacgcagccgaataa
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integrated database retrieval system
