Erythrobacter sp. KY5: CD351_00855
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Entry
CD351_00855 CDS
T05511
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
erk
Erythrobacter sp. KY5
Pathway
erk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CD351_00855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erk03021
]
CD351_00855 (rpoB)
03400 DNA repair and recombination proteins [BR:
erk03400
]
CD351_00855 (rpoB)
Enzymes [BR:
erk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CD351_00855 (rpoB)
Transcription machinery [BR:
erk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CD351_00855 (rpoB)
DNA repair and recombination proteins [BR:
erk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CD351_00855 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF6888
Motif
Other DBs
NCBI-ProteinID:
AWW72969
LinkDB
All DBs
Position
complement(187065..191267)
Genome browser
AA seq
1400 aa
AA seq
DB search
MATKAKTPNKGKVRSRKAQGTAKKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDKDT
GYVSGLEKTLRSVFPIRDFAGTAELDFVHYELEEPKYDTTECRQRGITYAAPMKVTLRLI
VFEVDQETETRSVLDIKEQDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHDR
GKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLDSEAIL
HHFYDTVVWERAKDGWKIPFLAEQWRGQKPTFGLVDAKTGEEVFPAGTKISPRAANKAAK
DGLETLLLPTEEVVSRYAANDMIDESTGRIYIEAGDEITLEHVETFDNAGIDSLELLDID
EVNTGPWIRNTLKVDKAENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLSA
VGRVKLNMRLELDAEDTVTTLRKEDILAVVKELVGLKDGKGEVDDIDNLGNRRVRSVGEL
LENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTN
PLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFS
RVNKYGFIETPYRKVEGNKVTGDVIYLSAMEEQKHTVAQASAELNDDGSFVEDLISARQS
GDNLMAPNDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPW
VGTGMEETVARDSGAAIAAKRGGIVDQVDATRIVIRAIGDVEPGQSGVDIYTLQKFQRSN
QNTCINQRPLVKVGETIEPGDIIADGPSTDLGELALGKNSLVAFMPWNGYNYEDSILISE
RIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPG
DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIE
IDDRTRAIQNEEIERLRKDAADERNILNRATYNRLRDMLLGQTASAAPKGVKKGSEITEE
VLEEVERHEWFKFAVADDGRQAQIEAIKSQYDESAKMIDDKFEDRKEKLERGDELAPGVL
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTPVDLVLNPLGVPSRM
NVGQIFETHLGFAARGLGMDIADKLEEWHAANPNAKQDYASAKPPEAVVERLKDVYGEQY
FEDLESRSTAGIVELAQNLSAGVPMGTPVFDGAREQDVTDMLVKANIHSSGQSVLFDGRT
GEAFDRKVTVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGMNV
ELKSLSDGDESDDEWPEAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggcgaagaccccgaacaaggggaaggtccgcagccgcaaggcgcaaggt
accgctaagaagcgtatccgcaagattttcggcgacattcacgaagtcgtccagatgccc
aacctgatcgaagtccagcgcgagagctacgaacagttcctgcgttcggacaaggacact
ggctatgtttcgggtcttgaaaagaccctgcgcagcgtcttcccgatccgcgactttgcc
ggcaccgctgaactcgacttcgtgcattacgaactcgaagagccgaaatacgacacgacc
gaatgtcgccagcgcggcatcacctacgcagccccgatgaaggtgacgctgcgcctgatc
gtgttcgaggttgaccaggaaaccgaaacccgttccgtcctcgatatcaaggagcaggac
gtgtacatgggcgacatgccgctcatgaccgagaacggcactttcatcatcaacggcacc
gagcgtgtgatcgtctcgcagatgcaccgttcgcccggtgtgctgttcgaccacgatcgc
ggcaagacccactcgtcgggtaaactgctgttcgccgcgcgcgtcatcccttatcgcggt
tcgtggctcgacttcgagttcgacgccaaggacatcgtcaacgtccgtatcgaccgcaag
cgcaagctgccggtcaccgcgctgctttatgctctgggcctcgacagcgaagcgatcctg
caccacttctacgacaccgtcgtttgggagcgcgccaaggacgggtggaagattcccttc
ctcgccgaacaatggcgcggtcaaaagccgaccttcggcctagtcgatgccaagaccggt
gaggaagtcttcccggctggaaccaagatcagcccgcgcgctgccaacaaggcggccaag
gacggtcttgagaccctgctccttccgaccgaagaagtcgtcagccgctacgccgccaac
gacatgatcgatgagagcacgggccgcatctatatcgaagcgggtgacgagatcacgctt
gagcacgtcgaaaccttcgacaacgccggcatcgacagtctcgaactgctcgacatcgac
gaggtcaacaccggcccgtggatccgcaacacgctcaaggtcgacaaggccgaaaaccgc
gatgagggccttgaggccatctacaaggtgatgcgtccgggcgaaccgccgaccaaggaa
accgcagaagcgctcttcgaaggcctgttcttcgatggcgagcgctacgacctttccgcc
gttggccgcgtgaagctcaacatgcgcctcgaactcgatgccgaagacaccgtgaccact
ttgcgcaaggaagacatccttgccgtggtcaaggagctggtcggcctgaaggacggcaag
ggcgaagttgacgatatcgacaacctcggcaaccgccgcgtgcgttcggtcggtgagctg
ctggaaaaccagtaccgcgtcggcctcctgcgtatggaacgcgcagtcaaggagcgcatg
agcagtgtcgatgtatcgaccgtcatgcccaacgacctcatcaacgcaaagccggctgtg
gctgctgttcgcgaattcttcggctcttcacagctgtcgcagttcatggaccagaccaac
ccgctttcggaagtcactcacaagcgccgcgtttcggcgcttggcccgggtggtctgacg
cgtgagcgcgcaggcttcgaagtccgcgacgttcacccgacgcactatggtcgtatctgc
ccgattgaaacgccggaaggcccgaatatcggcctcatcaactcgctggcctcgttcagc
cgggtcaacaagtacggcttcatcgaaacgccataccgcaaggtcgagggcaacaaggtc
acgggcgacgtgatttacctgtccgccatggaagagcagaagcacaccgttgcgcaggct
tcggctgagctcaacgatgacggctcctttgtcgaagacctgatctcggctcgccagtcg
ggcgacaacctgatggcgccgaacgaccagatcacgctgatggacgttagccccaagcag
cttgtttcggtcgcagcctcgctcattccgttcctcgaaaacgatgacgccaaccgcgcg
ctgatgggctcgaacatgcagcgccaggcggtgccgcttgtgaaggctgaggcaccgtgg
gtcggcaccggcatggaagagaccgtggcgcgcgattcgggcgctgctatcgctgccaag
cgcggcgggatcgtcgaccaggtcgatgcaacccgtatcgtgatccgcgccatcggagat
gtcgaacccggccagtcgggcgtcgacatctacacgctgcagaagttccagcgttcgaac
cagaacacctgcatcaatcagcgtccgctggtgaaggtgggtgagacgatcgaaccgggc
gatatcatcgctgacggtccttcgacggatctgggcgagctggcgctgggcaagaacagc
ctcgtcgccttcatgccctggaacggatacaactacgaagactccatcctcatttccgag
cgtatcgtgaaggacgatgtcttcacctcgatccatatcgaggaattcgaagtcatggct
cgcgacacgaagcttgggccggaagacatcacccgcgacatccccaatgtcggcgaggaa
gccctgcgcaacctcgacgaggcgggcatcgtctatatcggtgcagaagtgcatccgggc
gatattctggtcggcaagatcacgccgaagggcgaaagcccgatgacgccggaagaaaag
cttctgcgcgccatcttcggtgaaaaggcttcggatgttcgcgatacctcgctgcgtctg
ccgccgggtgttgccggcacgatcgtcgaagttcgcgtgttcaaccgccacggtatcgag
atcgacgaccgtacgcgtgcgatccagaacgaagagatcgagcgccttcgcaaagacgcg
gctgacgaacgcaacatcctcaaccgtgcgacctacaaccgtttgcgcgacatgctgctc
ggccagaccgcttcggctgcgcccaagggcgtgaagaagggttccgagatcaccgaagag
gtgcttgaggaagtcgaacgtcacgaatggttcaagttcgcagttgccgacgatggtcgc
caggcccagatcgaagcgatcaagtcgcaatatgacgagagcgccaagatgatcgacgac
aagttcgaagatcgtaaggaaaagcttgagcgtggtgacgagctggctcctggcgtcctc
aagatggtcaaggtcttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggcc
ggacgtcacgggaacaagggtgtgatttcacgcatcctgccgatcgaggacatgccgttc
ctcgaagacggtacgccggtcgatctcgtgctgaacccgctgggtgtgccttcgcgtatg
aatgtcgggcagatcttcgaaacccaccttggtttcgcagcgcgtggccttggcatggat
atcgctgacaagcttgaggaatggcacgccgccaacccgaacgccaaacaggactacgcc
agtgcgaagcctcctgaagcggtcgtggagcgtctcaaggacgtctatggcgagcagtat
ttcgaagacctcgaaagccgctcgaccgctggcatcgttgagcttgcgcagaacctgagt
gccggtgtcccgatgggtacgccagtgttcgatggcgcgcgtgagcaggacgtgaccgac
atgctggtcaaggcaaacatccacagctccggtcagtcggtgctgttcgatggccgcacc
ggcgaagcgttcgaccgcaaggtaaccgtgggcatcatctacatgctcaagctccaccac
cttgtcgacgataagatccacgctcgctcgatcggcccatactcgctcgtcacccagcag
ccgctgggcggtaaggcgcagttcggtggacagcgcttcggcgagatggaggtctgggcc
cttcaggcatacggcgcagcctacaccttgcaggaaatgctcaccgtcaagtcagacgac
gtcgttggccggaccaaggtctacgaagcgatcgtcaagggcgacgacacctttgaggcc
ggcattccggagagcttcaacgttctcgtcaaggaaatgcgctcgctgggtatgaacgtc
gaactcaagtcgctgtctgacggcgacgagagcgacgatgagtggccggaggcagcggaa
taa
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