Erythrobacter sp. KY5: CD351_01040
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Entry
CD351_01040 CDS
T05511
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
erk
Erythrobacter sp. KY5
Pathway
erk02020
Two-component system
erk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
erk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CD351_01040 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CD351_01040 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erk03021
]
CD351_01040 (rpoN)
Transcription machinery [BR:
erk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CD351_01040 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AWW73006
LinkDB
All DBs
Position
234916..236409
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AA seq
497 aa
AA seq
DB search
MALGPRLDLRQSQQLVMTPQLQQAIKLLAASNLEIESFIGEALESNPLLEAGATSREDTG
ASSDADDIPREEFTSDQLMAQGQGESEAPLDIDVSAIDRDRDTGDGARMSDAEWGASGGS
GMGADDLPGIEASKAAKLSLTEHLYAQIGALACNDQEAFVARHIAGLLDDAGYLPVSLRE
IAQDLSVDMDCAEDALEVIQMCDPTGVGARDLAECLRLQAKEADRLDPCMEALLDNLDLV
AKGEVARLKRLCQVDDEDFSDMLRELREYDPKPGLAFAPASDEAVVPDVLVTRAEGGGWD
IKLNEATLPRLVVNRSYYVEIESGSPGAETQSWLKEKLADAHWLIRALDQRQKTILKTAA
QIVKQQEGFFLHGVSELRPLTLREVAEEIDMHESTVSRVTSNKYLHCERGSFELKYFFSS
GVASADGEGASAEAIKARIKALTDAEDPKKVLSDQKLADMLNEEGFELARRTVAKYREAI
GIGSSAQRRRAKKLAGI
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccctgggtccgcgcctcgatcttcgacagtcacaacagctggtcatgacgccgcag
ctgcagcaggcgatcaagctgctggcggcctcgaacctcgaaatcgagagcttcatcggc
gaggcgctcgaaagcaatccgctgctcgaagccggcgcgacatcgcgcgaggataccgga
gcctcaagcgatgctgacgacatcccgagagaggaattcacttccgatcagctgatggcg
cagggccaaggcgaaagcgaagccccactcgacatcgatgtaagcgccatcgaccgggac
cgcgacacgggcgacggcgcgcgcatgtcggatgccgaatggggagcgagcggcggctcc
ggcatgggtgcagacgaccttcccggaattgaggccagcaaagccgccaaattgtcgctc
accgaacacctatatgcgcagatcggagcgctcgcctgcaacgatcaggaggcattcgtc
gcccggcacattgcgggcttgctcgatgatgcagggtaccttccggtcagcctgcgcgaa
atcgcgcaggacctcagtgtggacatggactgcgcggaagacgcgcttgaagtgatccag
atgtgcgatcccacaggcgtgggtgcgcgcgaccttgcggaatgccttcgccttcaggcc
aaggaggcagaccggctcgatccgtgcatggaagcgctgctcgataatctcgaccttgtc
gccaagggcgaagtcgcccggctcaagcggctttgccaggtcgatgatgaagatttctcc
gatatgctgcgtgaactgcgcgaatatgatcccaagccgggcctcgcctttgcgccggca
agcgatgaagccgtcgtgcccgacgtgctggtcacccgcgccgaagggggcggttgggac
atcaagctcaacgaggcgacgctgccgcgactggtggtcaatcgcagctattacgtcgag
attgaaagcgggtcgcccggggccgaaacgcaaagctggctcaaggaaaagcttgccgat
gcgcactggctcatccgcgcactcgaccagaggcagaagacgatcctgaaaaccgcagcg
cagatcgtgaagcagcaggaaggctttttcctgcacggcgtgtccgaactgcgcccgctg
accttgcgcgaggtcgccgaggaaatcgatatgcacgaaagcaccgtcagccgcgtgacg
agcaacaagtacctgcattgcgagcgcggcagcttcgaactcaaatacttcttctccagc
ggggtggcgagcgcggacggcgaaggtgcgagcgccgaggcgatcaaggcgcgcatcaag
gcgctgaccgatgcagaggacccaaagaaagtgctgtccgatcagaagctcgcagacatg
ctgaacgaagaaggcttcgagctcgcccggcgcacggtcgccaaatatcgcgaggcgatc
ggtatcggttcgagcgcgcaaagacgccgcgcaaagaagcttgccggcatctag
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