Thomasclavelia ramosa: EYR00_01555
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Entry
EYR00_01555 CDS
T06753
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erm
Thomasclavelia ramosa
Pathway
erm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYR00_01555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erm03019
]
EYR00_01555
Enzymes [BR:
erm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EYR00_01555
Messenger RNA biogenesis [BR:
erm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EYR00_01555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
NgoMIV_restric
DFF40
Motif
Other DBs
NCBI-ProteinID:
QMW73437
LinkDB
All DBs
Position
337203..338513
Genome browser
AA seq
436 aa
AA seq
DB search
MKFSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPIL
QKLYLRDESEKYPRTIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVT
KINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRR
HQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLL
ENPQIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLV
ASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDI
QKFINQDIPVVDNPYYPMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQGQKKSSVRTNNI
KKNSKTKRSNFKRRRP
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaattagaattaattgaaccattattaaatgcagtaaaagaaatgaaa
tatgatatcccctcaccgattcaagaacaggcaattccagcaattatttcgggaagagat
atttttggatgtgccaagactggaacagggaaaacagcagcttttgctttaccgatttta
caaaaattatatttacgtgatgaaagcgaaaagtatccacgaactattaaagcactgatt
ttggctccgactcgtgaattagcaattcaaatcaatgagacttttgaggcaatgaatccg
caggttaatttaaaatcagcagttatctttggtggggttcgtcagggtagtcaggttact
aaaattaatcgtgggatcgacgtgctgattgccacgccaggaagactgattgatctttat
aatcaaggattggtggatttaaaacatgtagaatacttagttttagatgaagcagatcgt
atgttggatatgggatttattaaagatattcgtaagatcttaagatttattcctcgtcgt
catcaaactatgttattttcagcaaccttacctgatgaaattaaacacctggttagtgat
ctactgaatgacccgcttaaaatcatgataagcagtggtaatgttacagtagaaaaaatt
aatcaatcgctatactttgttgataaagtaaataaagctaagttattgatcaagttatta
gaaaatcctcaaatatataatgcaattgtttttgttaggacaaaaagaaatgtggatact
ttatgtaagaaactaattaaggcgcaaataacttgtgagggaatccatggtgataaatct
caaaatgcacgtgttcgagcattaaataacttcaaaaatgataaagttcgagttcttgtt
gctagtgatattgctgctcgagggatcgatattgatgaattaacacatgttattaatttt
gatttacctgatcaagcagaaaattatgttcatcggatcggccgaactgctcgtgctgga
gcatcgggagaagcaattacattttgtagttttcaagaaaaggcattattaaaagatatt
caaaaatttattaaccaagatattccggtggtggataacccttattacccaatgaaagat
ttatcaataccagaaaagaaacataaaagtaaaaaaaagggtgaaacacaaaaatcacgt
gataaagctaagcacttgaaacaaggacaaaaaaagtcatcagtaagaacaaataacata
aaaaagaatagtaagacaaaaagaagtaattttaaaagaaggcgtccttaa
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