Thomasclavelia ramosa: EYR00_02660
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Entry
EYR00_02660 CDS
T06753
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
erm
Thomasclavelia ramosa
Brite
KEGG Orthology (KO) [BR:
erm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
erm03009
]
EYR00_02660 (rlmD)
Enzymes [BR:
erm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EYR00_02660 (rlmD)
Ribosome biogenesis [BR:
erm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EYR00_02660 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
MTS
Methyltransf_15
TRM
RrnaAD
Methyltransf_25
PrmA
UPF0020
Methyltransf_4
Methyltr_RsmB-F
PCMT
Methyltransf_32
TPMT
Methyltransf_12
TBCA
Methyltransf_11
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QMW73654
LinkDB
All DBs
Position
553151..554287
Genome browser
AA seq
378 aa
AA seq
DB search
MKCLIEKKCGSCKYINTDYQRQLKIKTDYCKKLLKDNKLDMYEVKDTIGMGHPYEYRNKI
IVAFNHRYEFGFYEEDSHKIIPYDRCLLHEELSDMIIKKIQSLLKRYRVSIYDENRNRGL
LRHVLIRRALVTNQTMVVLVCNDNVFKGSKNFCNELIKNFPSIKTVVLNVNKRKTSVVLG
NEEKILYGKGFIVDELCGLKFKISPKSFYQINHQQCELLYSKALDLLNLTGQERIIDAYC
GIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAFMIKLAKQKQ
KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPSTQVRDIKYFAKIGYRGEVMYPV
DMFPHTSHVETIVLLSKI
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtttaatagagaagaaatgtggtagctgtaaatacattaatactgattaccag
agacaattaaagattaaaacagattattgtaagaagctgttaaaagataataaattagac
atgtatgaagtcaaggatactattggaatggggcatccttatgaataccgtaataaaata
attgttgcttttaatcatagatatgaatttggcttttatgaagaggatagtcataagatt
attccttatgatcgttgtcttcttcatgaagaactcagtgatatgattattaagaagatt
caaagcttattaaaacgatatcgagttagtatttatgatgaaaatcgtaatcgcggatta
ttgcgtcatgtattaattcgacgtgctcttgttactaatcagacaatggtagtactagtt
tgcaatgataatgtatttaaaggatccaaaaatttttgtaatgagttgattaaaaatttt
ccaagtattaagacggttgtattaaatgtaaataaacgtaaaacgagtgtggttttaggt
aatgaagaaaagattctttatggtaagggatttatagttgatgaattgtgtggtttgaag
tttaagatttcgccaaaatcattttatcaaattaatcatcaacagtgtgaattactgtat
tctaaagctctagatttattgaatttaacaggtcaagaaagaattatagatgcttattgt
ggaattgggacaattggaatgattgtagctaatagaactaaggaagttactggtgtggaa
ttaaataaagatgcagttaaagatgccatcaataatgctaaaatgaataagattgaaaat
attaaatttattaatgatgatgcttctgcttttatgattaaattagctaaacagaagcaa
aaagttgattgtgtaattatggatcccccacgcagtggcagtacgcaggaatttatggat
gctgtaaaaatcttgaatcctaaacaagttgtttatatttcttgtgatccaagtactcag
gtaagggacatcaagtattttgcaaaaattggctatcgtggtgaggtaatgtatccggtt
gacatgttccctcatactagccatgttgagacaatcgtactgctatcaaaaatataa
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