Thomasclavelia ramosa: EYR00_14075
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Entry
EYR00_14075 CDS
T06753
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
erm
Thomasclavelia ramosa
Pathway
erm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYR00_14075 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erm03021
]
EYR00_14075 (rpoC)
03400 DNA repair and recombination proteins [BR:
erm03400
]
EYR00_14075 (rpoC)
Enzymes [BR:
erm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYR00_14075 (rpoC)
Transcription machinery [BR:
erm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYR00_14075 (rpoC)
DNA repair and recombination proteins [BR:
erm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYR00_14075 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3563
Motif
Other DBs
NCBI-ProteinID:
QMW75773
LinkDB
All DBs
Position
complement(2936650..2940318)
Genome browser
AA seq
1222 aa
AA seq
DB search
MANTNKFSAIQIGLASPEKIREWSYGEVKKPETINYRSQKPEKDGLFCEKIFGPSKDWEC
SCGKYKKVRYKGVVCDRCGVEVTKSAVRRERMGHIELATPIAHIWYLKGIPSRMGLILDM
SPKQLEEIIYFVSYVVIDKGSTPLEYKQVLSERDYRKCFEQFGHTFEAQIGAEAIQTLLQ
QVDLDAEFAKVTKELKEAQGQKRTKLLKRLEAIEAFRTSTNEPEWMILEALPVIPPDLRP
MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPSIIVQNEKRMLQEAVDALIDNGR
RSKPITGAGGRALKSLSHTLKGKQGRFRQNLLGKRVDYSGRSVIAVGPDLKMYQCGIPRE
MALNLFKPFVINGLVRDQLATNIKAAERLIDKMDDRIWPIVEEVIQQHPVLLNRAPTLHR
LGIQAFEPKLVEGRAIRLHPLVTPAFNADFDGDQMAVHVPLGEEAIQEARQLMLGSNNIL
GPKDGKPIVTPSQDMVLGNYYLTLEDEGGLGEGTVFADRNEVDHAYFAKTVELHTRVAIK
ASALKNETFTKAQNDCYLITSVGKILFNDIFDGKFPFINDPSSENLIATPDKYFVPMGTD
IKEHIRNQKIIKPLNKKSLGKIIDEVFKHSAMSDTSLMLDKLKDQGFYYSTIAGTTVSVY
DIQVPEAKYEIFEKADEKLEQIKKFYNKGKLTESERYQNVIKLWTDVKDEVQEVVRLEFE
ADDRNPIFIMSDSGARGSLSNFTQLVGMRGLMSNPKGETIELPIKSSFREGLTASEFFIS
THGARKGSTDTALKTADSGYLTRRLVDVAQEVIISEEDCGTDRGFVVTELYNNDDKSVIV
PLHDRLVGRYSQKDIFHPETKELIIAGGELITEALADEIVNAGITAVEIRSVLGCNAKGG
VCRKCYGRNLATGDVVELGEAVGIMAAQSIGEPGTQLTMRTFHDGGVAGGADITQGLPRI
QELFEARNPKAKSIISEIEGEVTNIIDNAGRMEVVITNDLETRSYLAPYGAKIRVNVGDH
VNIGAKITKGSIDPKELLSVADVEAVENYIIKEVQKVYRIQGIEISDKHIEIIVKQMLRK
MKVVEGGETGCLPGTNINVNAFTELNKQVLKDGKHPAVARPVLLGITKASLETESFLSAA
SFQETTKILTDASIKGKKDHLLGLKENVLIGKLLPAGTGLRGALKSPERLAREAEEAMLA
SQEDMDDLIDNDNEIEMMEQAG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatacaaataaattctcagcaattcaaattggcttagcttcccctgaaaagatt
cgcgaatggtcttatggtgaggttaaaaaacctgaaactattaactatcgttctcaaaaa
ccggaaaaggacggattattttgtgaaaagatttttggtccttcaaaggactgggaatgt
agttgcggtaaatacaaaaaagtacgttataaaggtgtagtatgtgatcgttgtggagtt
gaagtaactaaatcagctgttcgtcgcgaaagaatgggacacattgaattagcaacacca
atcgctcatatttggtatttgaaaggaattccatcaagaatgggacttatcttagatatg
tcaccaaaacaattagaagaaattatttactttgtttcttatgttgttattgataaagga
agtacaccattagaatacaagcaagtattatctgaaagagactatcgtaaatgttttgaa
caatttggtcatacttttgaagcccaaattggggctgaagcaattcaaacattattacaa
caagttgatctagatgctgaatttgcaaaagtaactaaagaacttaaagaagctcaaggt
caaaagagaacaaaattattaaaacgattagaagcaattgaggcttttagaacttcaaca
aatgaaccagagtggatgattcttgaagctttaccggtaataccacctgatttgcgtcca
atgttacaattggatggggggcgttttgctacttctgatttaaacgatttatatcgtcgt
gttattactcgtaataatcgtttaaagaaattattagaacttggaacaccttctattatc
gtgcaaaacgaaaagagaatgttgcaagaagctgttgatgctttgattgataatggtcgt
cgttcaaaaccgattactggtgctggtggacgtgcattaaagtcattaagccatactcta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgattactcagga
cgttctgtaatcgcagttggtcccgatttaaaaatgtatcaatgcgggattccacgtgaa
atggcattgaatctattcaaaccattcgttattaatggtctcgttagggatcaattagca
acaaatattaaagctgctgaaagattaattgataaaatggatgatcggatctggccaatt
gttgaagaagttattcaacaacatccagtgttacttaaccgtgcacctacattgcataga
ttaggaatccaggcattcgaaccaaaactagttgaagggcgagcaattcgtctacatcca
ctggttactccagcgttcaatgccgatttcgatggtgaccaaatggcggtccatgtacca
ttaggtgaagaagcaattcaagaagctcgtcaattaatgctaggttcaaataatatctta
ggtccaaaagatggaaaaccaatcgttacaccatctcaggacatggtattaggaaattat
tatttaacacttgaagatgaaggtggcttaggagaaggaactgtctttgctgatcgtaat
gaagttgatcatgcttattttgctaaaacagtagaattacacactcgtgtagcaatcaaa
gcgtcagcattaaagaatgaaactttcactaaagcacaaaatgattgttatttaatcaca
tctgttgggaaaattttatttaatgacatctttgatggtaaattcccatttattaatgat
ccaagcagtgaaaacttaatcgctactccagataaatattttgttccaatgggaacagat
attaaagaacacattagaaatcaaaagattattaaacctttaaataaaaaatctttagga
aagatcattgatgaagtgtttaaacattcagcaatgtctgatacaagtttaatgcttgat
aaattaaaagaccaaggtttctattactcaacaattgctggtacaactgtatctgtatac
gatatccaagtgccagaagctaaatatgaaatttttgaaaaagctgatgaaaaactagag
caaattaaaaagttctataataaaggtaaattaactgaatcagaaagatatcaaaatgta
attaaattatggactgacgttaaagacgaagttcaagaagttgtacgtttagagttcgaa
gctgatgatcgtaacccgatcttcatcatgtctgattctggagcccgtggatcattatct
aactttacgcaattagtaggtatgcgtggattaatgtcaaatccaaaaggggaaacaatt
gagttgccaatcaagtcttcatttagggaaggtttaacagcatcagaattctttatctct
acccatggtgctcgtaaaggttctaccgatacagctttaaaaactgccgattctggatat
ttaacaagacgtttagttgatgttgctcaagaagtaattatttctgaagaagactgtgga
actgatcgtggctttgtagttacagaattatacaataatgatgataaatcagtcattgta
ccattacatgaccgtttggttggtcgttattcacaaaaagatattttccatccagaaact
aaagaattaattattgctggtggagaattaattactgaagcattagctgatgaaattgtt
aatgctggaatcactgctgtagagattcgttctgttttagggtgtaatgctaaaggtgga
gtatgtcgtaaatgttacggacgtaacttagctacaggggatgtggttgaattaggagaa
gctgtaggtattatggcggctcaatcaattggggaacctggtacccaattaacaatgcgt
acattccatgatggtggggttgccggtggtgccgatattactcaagggttacctcgtatc
caagagttattcgaagctcgtaatccaaaagcaaaatctattattagtgaaatcgaagga
gaggttactaatattattgataacgctggaagaatggaagtcgttattactaatgattta
gaaacgcgtagttatttagcgccatacggtgctaaaatccgggtgaacgttggtgatcat
gtcaatattggagctaaaatcactaaaggttcaattgatccaaaggaattattatcagtt
gctgatgttgaagcagttgaaaactatattattaaagaggttcaaaaggtatatcgaatt
caaggtatcgaaatttctgataaacatatcgaaatcatcgttaaacaaatgctaagaaaa
atgaaagtagttgaaggtggggaaacaggttgtctacctggtacaaatattaatgtaaac
gcctttactgaattaaataaacaagttttaaaagatggtaagcatccagcagtagctcgt
ccagtattactagggattacaaaagcatctcttgaaactgaatcattcttatctgcagca
tcattccaagaaactactaagatcttgaccgatgcttcaatcaaaggtaagaaagatcat
ttattaggattgaaagaaaacgtattaattggtaagctattgccagcagggactggtctt
cgtggagctcttaaatcaccggaaagattagcgcgcgaagctgaagaagcaatgttagcg
agtcaagaagatatggatgatttaattgataatgacaatgaaatagaaatgatggaacaa
gcaggttaa
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integrated database retrieval system
