Enterobacter roggenkampii DSM 16690: BFV67_01195
Help
Entry
BFV67_01195 CDS
T05556
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ern
Enterobacter roggenkampii DSM 16690
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ern03016
]
BFV67_01195
Enzymes [BR:
ern01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BFV67_01195
Transfer RNA biogenesis [BR:
ern03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BFV67_01195
Prokaryotic type
tRNA splicing ligases
BFV67_01195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF8062
DUF4402
Motif
Other DBs
NCBI-ProteinID:
AOP93858
LinkDB
All DBs
Position
267074..268300
Genome browser
AA seq
408 aa
AA seq
DB search
MQQNDFELLTASNGAPIKMWTHGVPVEPEAQAQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVAGDLPDNLSGLRSAIEQAVPHGRTNTRS
RRDKGAWETPPKEVDDRWWVLAPRFKQLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
QQRVWVMLHSGSRGVGNAIGNVFIALAQQDMQHHLGHLPDKNLAYFQEGSRHYEDYIEAV
EWAQDFARHNREVMMSRVLAALSREVTKPFITQQEAVNCHHNYVQKEHHFGEEVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVMSRTAAKKRYTLSDHIQA
TSHVECRKDNEVIDETPMAYKDIDAVMAAQSSLVEIVHILRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaatgattttgaattactgacggcgtcaaacggcgccccgatcaaaatgtgg
actcacggtgtgcccgtggaaccagaggcacaggcgcagttactgaatactgcaaagatg
ccgtttattttcaaacaccttgcggtgatgcccgacgttcatctcggtaaaggctcaacc
atcggcagcgtgattccgaccaaaggggcaattattcctgcggcggttggcgtggatatt
ggctgcgggatgattgccgttcgcacgtcgctggtggcgggtgatttgccggataatctc
agcggtttacgtagcgccattgaacaggcagtaccgcatgggagaaccaatacgcgttct
cgacgggataaaggcgcgtgggaaacgccaccgaaagaagtggacgatcgctggtgggtg
ctggccccacgttttaaacaactcacggataaatacccgcagttgctgaaaaccaacaac
taccagcatctgggcacgctgggtaccggaaaccactttattgaaatttgcctcgatgag
cagcagcgcgtctgggtgatgttgcacagcggctcgcgcggcgtaggaaacgccatcggt
aatgtgtttatcgccctggcacagcaggatatgcagcatcacctgggacatctgccggat
aaaaatctggcctattttcaggaggggagtcgtcactatgaggactacatcgaggcggtg
gagtgggcgcaggattttgcccgccacaatcgggaagtgatgatgtcgcgcgtgctggcg
gcgctctctcgcgaagtgacaaagccctttattacgcagcaggaggcggttaactgccat
cacaactatgtgcagaaagaacatcactttggggaagaggtactgatcacgcgcaaaggt
gcggtgtcggcgcagaaagggcagatggggattattccgggctcaatgggcgcaaagagc
ttcatcgtgcgtggcctcggcaacgagcaaagcttctgttcctgcagccacggcgccggg
cgagtgatgagccgaacggcggcaaaaaaacgctatacccttagcgaccatattcaggcg
acctctcacgtagagtgtcgcaaagacaatgaggtgatcgatgaaacgccgatggcctat
aaagacattgatgccgtgatggccgcgcaatcgtcgctggtggagatcgttcacatcctg
cgtcaggtagtgtgtgtaaaaggataa
DBGET
integrated database retrieval system
