Enterobacter roggenkampii DSM 16690: BFV67_03760
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Entry
BFV67_03760 CDS
T05556
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ern
Enterobacter roggenkampii DSM 16690
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ern03019
]
BFV67_03760
Enzymes [BR:
ern01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BFV67_03760
Messenger RNA biogenesis [BR:
ern03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BFV67_03760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOP94336
LinkDB
All DBs
Position
818980..821409
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AA seq
809 aa
AA seq
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MSSLPVAVVLPDLLAALRHSPQVLLNAPTGAGKSTWLPLQILKEGNISGKIILLEPRRLA
ARNVAQRLAELLNEKPGETVGYRMRAETCVGPTTRLEVVTEGILTRMLQNDPELTGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLRLLIMSATLDNARLRQALPDAPVISSEGRA
FPVERRYQPLPSHQRFDEAVAIATAELLRQEPGSLLLFLPGVGEIQRVQEQLSSRVGGDV
LLCPLYGALSLQEQRKAILPAPVGQRKVVLATNIAETSLTIEGIRLVVDSAQERVASFDP
RTGLTKLLTQRISQASMVQRAGRAGRLEPGICLHLTSAEQAERATQQSTPEILQSDLSGL
VMDLLQWGCPDPGQLTWLDSPPAVNLTAARNLLTQLGALEGERLTVRGQKMAALGNDPRL
AAMLVAAQGEDEIATAAKLAAILEEPPRGGSSDLGQAFSRNQGNWQQRAQQLCKRLNSRG
GVPDSESISRLLAQAFPDRIARRRGLDGRYQLANGMGAMLDSDDALTRHEWLIAPLLLQG
SNSPDARILQAIAVDIDALTRTCPHLLQQSDIVEWDDAQGTLKAFRRSQIGKLTLGTKPL
AKPSEDELHQAMLNGIREKGLSVLNWTPEAEQYRIRLHCAARWLPEYAWPAVDDETLLAS
LETWLLPQMSGVHSLRALKALDVKVALQNLLDWSLRQRLDSELPGHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATTPSIAEGRVPLVLELLSPAHRPLQITRDLGAFWAGSYRDVQ
KEMKGRYPKHVWPDDPANTAPTKRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattgccggtcgccgttgttcttcctgaccttctcgctgccttacgccattcc
ccgcaggttttgctgaatgccccgacgggggcgggtaagtccacctggctgccgctgcag
attctgaaagaggggaacatcagcgggaaaattatcctgctggagccgcgcaggctggct
gcacgcaacgtagcgcagcgcctcgcggaactgctgaatgaaaaaccgggcgaaacggta
gggtacaggatgcgcgccgagacctgcgtgggtccgacaacgcgccttgaggtggtcacc
gagggcattctcacccgcatgctgcaaaacgatccggagctgaccggcgtcgggctggtg
atcctggatgaatttcacgagcgcagcctgcaggcggatctggccctcgcgctgttgctg
gacgttcagcagggactgcgtgacgatctccggctgctgataatgtcggccacgctggac
aatgcgcggctacggcaggcgctacccgatgcgcctgtcatcagctctgaagggcgggcg
tttcctgttgaacgccgctatcaaccgcttccctcccatcagcgttttgacgaagcggtc
gccattgccaccgcagaactgctgcgtcaggaacccggctcgctgctgctgtttttgccg
ggcgtcggggagatccagcgcgtgcaggagcagctttcctctcgcgtaggcggtgatgta
ctgctctgcccgctctacggcgcgctgtcgctgcaggagcagcgtaaagctatccttcct
gccccggttggacagcgcaaggtggtactggcaaccaatattgctgaaaccagtttgacc
atcgaaggtattcgcctggtggttgatagcgcgcaggagagggtggcaagctttgacccg
cgcaccgggttgactaaactcctgacgcagcgcatcagccaggcatcaatggtgcagcgc
gcgggccgcgcggggcgacttgagccgggtatctgcctgcatttgaccagcgcagagcag
gcggaacgcgcgacgcagcaaagcacaccggaaattttacaaagcgatttgtctggcctg
gtgatggatctgctgcagtggggctgcccggatcctggacagcttacctggcttgattcc
ccgccagccgtgaacctcaccgctgcgcgcaacctgttgacccagcttggtgcgctggaa
ggcgaacgtctgacggtacgcggccagaaaatggcggcactgggcaacgatccgcgtctg
gccgcgatgctggtggccgcgcagggggaagatgagattgccacggcagccaaactggcg
gctatccttgaggagccgccgcgcggaggcagtagcgatctggggcaggcgttttcgcgc
aatcaggggaactggcagcagcgggcgcagcagctctgtaagcggcttaacagccgcggc
ggcgtgccagacagtgagagcatctcccggctgttagcgcaggcgtttccggaccggatt
gcgcgtcggcgcgggctggacggtcgctaccagctggcaaacggtatgggggcgatgctg
gacagcgatgatgccctcacgcgtcatgagtggctgattgcgccgctcctgctgcagggg
agcaactccccggatgcgcgtatcctgcaggcgattgccgtcgatattgacgccctgacc
cgtacctgtccgcatctgctccagcaatcggacatcgtcgagtgggatgacgcccagggc
acgctgaaggcgtttcgtcgtagccagattggcaaactgacactcggaacgaagccgctg
gcgaagccgtcggaagacgagctccatcaggctatgctgaacggcattcgggaaaaaggg
ctgagcgtgctgaactggacgccggaggctgagcagtaccgcattcgcctgcactgcgcc
gctcgctggttgccggagtacgcctggccagcggtggatgacgaaacgttactcgcgtcg
ctggagacctggctactgccgcagatgagcggcgtacactccctgcgggcgctgaaagcg
cttgatgttaaggtcgcgttacagaatttactggactggtcattgcgtcaacgtctggat
agtgaactgccagggcattacactgtgccgaccggaagccggattgccatccgttatcat
gaggataatccgccggcgctggcggttcgaatgcaggagatgtttggtgaggcaaccacg
ccgtctatcgctgaagggcgcgtgccgttggtgcttgaactgctgtcgcctgcgcatcga
cccttgcagatcactcgcgatctgggggcgttctgggcggggagctaccgtgacgtgcag
aaagagatgaaagggcggtaccccaaacacgtctggccggacgatccggcgaatacggcg
ccgacgaagcggacgaagaagtattcctga
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