Enterobacter roggenkampii DSM 16690: BFV67_08090
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Entry
BFV67_08090 CDS
T05556
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ern
Enterobacter roggenkampii DSM 16690
Pathway
ern03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFV67_08090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ern03019
]
BFV67_08090
03009 Ribosome biogenesis [BR:
ern03009
]
BFV67_08090
Enzymes [BR:
ern01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BFV67_08090
Messenger RNA biogenesis [BR:
ern03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFV67_08090
Ribosome biogenesis [BR:
ern03009
]
Prokaryotic type
rRNA processing factors
BFV67_08090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AOP95145
LinkDB
All DBs
Position
complement(1736959..1740078)
Genome browser
AA seq
1039 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDDEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPAAQKPEATAAKAQPAQPGLLSRFFGALKKMFAGEEVQPEQPKEEPKAAKP
ERQQDRRKRQNNRRDRNDRSDRNERNERRDNRDNRSDNNEGREQREDNRRNRREKQQQNV
EDREIRQQAGDESEKSKQRDDQQPRRERNRRRNDEKRQAQQEVKNLNREEPVEQQDGEQE
ERTQVMPRRKQRQLAQKVRFASEATEETANVAVETRESATGTQLAKVDLPAVVDNNIEQD
ENGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVW
IRYPVARPEQVVEEQPVTEEVIAPVAAVEEVVTETATVVEPQVVETEAPQAADVETTHPE
VIAAPVDAAPQLIAEEDVVVAEEIAEEAEPVAAVEEAAETLVETTAEEVVEDVEIQVEPV
VEEPKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFSFEGKGAAG
GHSATHQATAPATRPQSVE
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccctgca
aactacaacgcccatggccgcccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagaacgtggcaacaaaggtgccgcactgacaacctttatc
agcctggcggggagctatctggtgctgatgccaaacaacccgcgtgcgggtggtatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcactggcaagccttgaactg
cctgacggcatggggcttatcgtgcgtaccgcaggcgtcgggaaatccgccgaagcgctg
cagtgggacctcagcttccgtttgaaacactgggaagccatccagaaagcagcggaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgtgatcgtgcgtgccttccgtgac
tacctgcgtcaggacatcggtgagattctgatcgataacccgaaagtgcttgagctggcg
cgccagcacatcgccgcgctgggccgtccggatttcaccagcaaaattaagctgtatacc
ggtgaaatcccgctgttcagccactatcagatcgaatcccagattgagtccgccttccag
cgtgaagtgcgtctgccatccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgacatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcgcgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgacccctgttcgtcaccagcgtgcggtagaa
aaccgtctgcgcgaagcggtgcgtcaggatcgtgcgcgtattcagattagccatatctca
cgctttggcctgctggagatgtcccgtcagcgtctgagcccatcgctgggtgagtccagc
catcacgtctgcccacgctgctccggcaccggcaccgtgcgtgataacgaatcgctgtcc
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaataccaaagaggttcac
gcgattgtgcctgtgccaattgcgtcctacctgttgaacgaaaaacgtgctgcggtcagt
gccattgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgatcagatggaa
accccgcactaccacgtgctgcgtgtccgtaaaggtgaagagacgtcaacgctcagctac
ctgctgccgaagctgcacgaagaagagatggccctgccatctgatgacgagccagcagag
cgtaagctgccagagcagcctgcgttagcgaccttcatcatgccagaagccccaccggaa
gccgccctggaaaaaccagcggccaaacctgcggcgcagaaaccagaagcgacggcagcg
aaagcacagccagcgcagccgggtctgctgagccgcttcttcggcgcgctgaagaagatg
tttgccggtgaggaagttcagccagagcagccgaaagaagagccaaaagcggccaagcct
gaacgtcagcaggaccgccgtaagcgtcagaacaaccgccgcgaccgtaatgaccgtagc
gatcgtaatgagcgcaacgagcgtcgtgacaaccgtgacaaccgctctgacaataacgaa
ggccgtgagcaacgcgaagacaaccgccgcaaccgtcgcgagaaacagcagcagaatgtt
gaagatcgtgaaattcgccagcaggcgggcgatgagtctgagaagagcaaacagcgtgac
gaccagcagccgcgccgtgaacgcaaccgtcgccgtaacgacgagaagcgtcaggcacag
caggaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggcgagcaggaa
gaacgtactcaggtcatgccgcgccgtaagcagcgccagcttgctcagaaagtccgtttc
gcctctgaagcaaccgaagagacagcaaacgttgcggttgaaactcgcgagagcgcaacc
ggtacgcagctggcaaaagttgacctgccagcggtcgttgataacaacattgagcaggat
gaaaacggtgaaaaccgtgataacgccggtatgccgcgccgttcacgtcgttccccacgt
catctgcgcgtcagcggtcagcgccgtcgtcgctatcgtgacgagcggtacccgactcag
tctccaatgccgctgaccgttgcatgtgcttcaccagaaatggcttccggcaaagtctgg
atccgctaccctgttgctcgcccggagcaggttgttgaagaacagccggtaacggaagag
gtcattgcacctgtagcagcggtagaagaggtcgtgactgaaacggcaaccgtggttgaa
cctcaggttgttgaaactgaagcacctcaggccgcggacgtcgaaaccacgcatcccgaa
gtgattgccgcgccggttgatgccgcaccgcagcttattgctgaagaagatgtcgtggtg
gctgaggaaatcgctgaagaggctgaacctgtagccgcggtagaagaagccgctgaaacc
ctcgtcgaaaccaccgctgaagaggtcgttgaggacgttgagattcaggttgaaccggtt
gttgaagagccgaaagcgcctgaagtgaaacctgagccggttgtctctgcgccagccgct
gcccacgtggcgacagcaccaatgacccgcgccccggcgccggattacgtgcctgaagcg
ccgcgtcacagcgactgggttcgcccggccttcagcttcgaaggtaaaggcgcagccggt
ggtcatagtgcaacgcatcaggcgactgcaccggcaacgcgtccacagtctgtcgaataa
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