Enterobacter roggenkampii DSM 16690: BFV67_18825
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Entry
BFV67_18825 CDS
T05556
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ern
Enterobacter roggenkampii DSM 16690
Pathway
ern02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BFV67_18825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ern03021
]
BFV67_18825
Transcription machinery [BR:
ern03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BFV67_18825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
AOP97152
UniProt:
A0A0F1WQP6
LinkDB
All DBs
Position
4037416..4039263
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEESDDDSADDDNSIDPELAREKFAELRTQYEVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVYRGLQKLQQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgacgaagatgcggaagaa
gctgctgcacaggtactgtccagcgtggaatctgaaatcgggcgtaccactgacccggtc
cgcatgtacatgcgcgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgcaaaacgcatcgaagatgggatcaaccaggttcagtgctctgttgccgagtacccg
gaagcgatcacctatctgctggagcagtacgatcgcgttgaagcggaagaagcgcgcctg
tctgacctgatcaccggttttgtcgacccgaacgctgaagaagatatggcgcctaccgcc
actcacgtcggttctgaactgtctcaggaagagatggatgatgacgaagacgaagatgag
gaagagagcgacgacgacagcgccgatgatgacaacagcatcgacccggaactggcgcgc
gagaagtttgccgagctgcgtactcagtacgaagtgacgcgtgacaccatcaaagcgaaa
ggccgcagccacgcagccgctcaggaagagatcctgaaactgtctgaagtgttcaaacag
ttccgcctggtgccaaaacagttcgactacctggtgaacagcatgcgcgtgatgatggat
cgcgtacgtacccaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccg
aagaagaacttcatcaccctcttcaccggcaacgaaaccagcgaaacctggttcaacgcg
gctatcgcgatgaacaagccgtggtctgaaaaactgcacgacgtgaaagaagacgtgtat
cgcggcctgcagaagctgcagcagattgaagaagagaccggcctgaccatcgagcaggtt
aaagatatcaaccgtcgcatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttgcgtctggttatctctatcgccaagaaatacaccaaccgcggt
ctgcagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagacaag
tttgaataccgtcgtggttacaagttctccacctacgcaacctggtggatccgtcaggct
atcacccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaagctcaaccgtatttcccgccagatgctgcaggagatgggtcgcgagccg
acgccggaagagctggccgagcgcatgttgatgccggaagacaagatccgtaaagtgctg
aagatcgccaaagagccaatctccatggaaacaccaattggtgatgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgcttgactctgccaccaccgag
agcctgcgtgccgcaacgcacgacgttctggctggcctgaccgcccgtgaagcgaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctg
cgtcacccaagccgctctgaagtgctgcgtagcttcctggacgactaa
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