Enterobacter roggenkampii DSM 16690: BFV67_19830
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Entry
BFV67_19830 CDS
T05556
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ern
Enterobacter roggenkampii DSM 16690
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ern03019
]
BFV67_19830
Messenger RNA biogenesis [BR:
ern03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BFV67_19830
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AOP97334
LinkDB
All DBs
Position
complement(4241591..4243531)
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AA seq
646 aa
AA seq
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MRLTTKFSAFITLLTGLTIFVTLLGCSLSFYNAIQDKLVNRVQSVASVIDTRLLTTPLPA
LSRELDELMVPVDIVQIDIQQGKHRVLSHERPGSYRPAGVVSQYREVTVHSLKNPGMTIR
MVYLDPMASYFRSMMTTAPLTVAVAFIVLLIFLAVRWLRRQLSGQELLEMRSVRILNGER
GPQVRGSVHEWPSRASSALDTLLSEIQFASDQRSRMDTLIRSYAAQDNKTGLNNRLFFDN
QLATLLDDSEKVGTHGVVMMVRLPDFDLLRDTWGQRAAEENLFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKESESIASQLLKAVDALPQSKMLDRDDMVHMGICAWRGGQST
EQVMEHAEAATRNAVLQGANGWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
MKNGNVHHRELMCRIFDGTEEVISAEYLPMVLQFGLSEEYDRQQISRLIPFLSFWPEESL
ALQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIFELAEADVGQHISRLRPVVRLINALG
ARVAVTQAGLTLVSTNWIKELDVELLKLHPGLVRNIEKRTENQLLVQSLVEACKGTRTQV
FAAGVRARGEWQMLTERGVMGGQGDFFAASQPLDTNVKKYLQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcttttatcaccttgctgacggggcttaccattttt
gtcacccttctgggctgctctctgagcttttacaacgccattcaggacaagctggttaac
cgggtacagtctgtcgcgtcggtaattgatacgcgtctgctgacgacgccgctaccggca
ctctccagggagctcgatgagttgatggtacctgttgatattgttcagatcgacattcag
cagggaaagcatcgtgtgttaagccacgaacgcccgggaagctatcggcctgcgggcgtg
gtgagccagtatcgggaagtgaccgtacattcccttaaaaatccggggatgaccatacgc
atggtctatctcgatccaatggccagctatttccgttccatgatgaccaccgcgccgctc
accgtcgcggtggcgtttatcgtcctgctgatctttctcgcggtccgctggctgcgccgc
cagctctccggccaggagctgctggagatgcgctccgtgcggatccttaacggtgaacgc
ggcccgcaggtccgtggttcagtccacgaatggccgtcacgcgccagcagcgcgctggat
acgctgctttcggaaatccagtttgccagcgaccagcgcagccgtatggatacgctgatc
cgctcctatgccgcgcaggataataaaaccggcctcaacaaccgccttttctttgataat
cagctcgccacgctgctcgacgattcggaaaaagtggggacgcacggggtggtgatgatg
gttcgcctgcctgatttcgatctcctgcgcgacacctggggacagcgggccgcggaagaa
aatctctttacgctgatcaacctgctctccacctttattatgcgctacccgggcgcgctg
ctggcccgctaccaccgcagcgactttgccgtgttgctgccgcatcggacgctgaaggag
tcggaaagcatcgccagccagctgctgaaggcggttgatgcgctgccgcagagcaaaatg
ctcgacagggacgatatggtccacatggggatctgcgcctggcgtggcggacaatcgaca
gaacaggtgatggagcatgcggaagcggccacccgcaacgccgtgctgcagggcgcgaac
ggatgggcggtctatgatgattcgctgccggaaaaagggcgcggtaacgtgcgctggcgt
acgttgattgagcaaatgctaagtcgcggcggaccgcgtatttatcaaaaacccgcggtc
atgaaaaacggcaacgttcatcaccgtgaactgatgtgtcgtatttttgacggtacggaa
gaggttatttctgcggaatatctgccaatggtgctgcaatttgggctgtccgaagagtat
gaccgtcagcaaattagccgcttgattccgtttttatcattctggcctgaagagagcctg
gcgttacaggtcaccgtggagtcattaatacgcccgcgttttcagcgctggctgcgtgat
acattaatgcaatgcgaaaaatcgcaacgcaaacgcattatttttgaacttgctgaggcg
gatgtaggtcaacacatcagccggttacgtccggtggttcgtttgatcaacgcgctcggc
gcgcgcgtcgcggtgacgcaggcaggtttgacgctggtcagcaccaactggatcaaggag
ctggatgtggagctattaaagctacatccggggctggtaaggaatattgaaaagcgcacg
gaaaaccagctgctggtacagagcctggttgaggcgtgcaaaggaacgcgaacacaggtg
tttgccgcgggcgtacgcgccagaggcgaatggcaaatgttaacagagcgcggtgtaatg
ggtggtcagggggatttttttgctgcctctcagccgcttgacaccaatgtgaaaaaatat
ttgcaaagatactcggtttga
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