Encephalitozoon romaleae: EROM_010940
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Entry
EROM_010940 CDS
T03458
Name
(RefSeq) RtcB-like protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ero
Encephalitozoon romaleae
Brite
KEGG Orthology (KO) [BR:
ero00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ero03016
]
EROM_010940
Enzymes [BR:
ero01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EROM_010940
Transfer RNA biogenesis [BR:
ero03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EROM_010940
Prokaryotic type
tRNA splicing ligases
EROM_010940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
20520721
NCBI-ProteinID:
XP_009263935
UniProt:
I6ZGX2
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All DBs
Position
I:92675..94108
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AA seq
477 aa
AA seq
DB search
MKDVEQAGLCIKINPSFNKSMRTSGTIYVDEELRKPLIEELNAGVTPSSIGQISDVCSLP
GLIGNVIGLPDIHTGYGFPIGCVAAFDINNPESVVSPGGIGYDINCGVRALRTNLDISCF
KEKAESLADELFGIIPTGMGSDKRSNVDLGALDSILDQGLDYLLKLKEIPDEDAEYCESN
GRMTGDSRLVGQKAKGRGLNQLGTLGSGNHYLEVQYVDEVYDTEKAEVMGIRKKQIVLMI
HSGSRGLGHRICHDSLMRMARMSTGYGQLACSPYNSKESQEYLLSMGCAANFAFVNRAMI
TKKARQAFERVFPEARLDLIYDVCHNIAKIESHKINGMEYDAIVHRKGASRAFPPGHRDI
PWKYKEMGQPVVVGGSMGTYSYILCGSEKSMELSFGSSCHGAGRVLSRGKSKDLFTHKNV
CDLLRDQDIVFRCPSDPGMVEESPGCYKDINRVVDLSDRIGLTKKVCRLKPCLVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgtggagcaagccggtctctgcataaagatcaacccgtcgttcaataagtcc
atgaggacatcggggaccatatatgttgatgaagaactaaggaagcccctgattgaagag
ttgaatgctggggtaactccatcttctattggccagatatctgatgtttgctctttgccg
gggcttataggaaacgttatagggctaccggacatacatacgggatatgggtttccgatt
ggatgtgttgcagcatttgacatcaacaatcccgagtctgttgtaagtccaggcgggata
ggatacgacatcaattgtggagttagagcactgaggactaaccttgacataagctgcttc
aaggagaaggccgagtctcttgcagatgagctgttcgggataatacccactggaatggga
agcgacaagaggtcaaatgtcgacttgggtgcattggactcgattctagaccaagggttg
gattacctgctgaaattaaaggagatacccgatgaggatgctgaatattgtgagagcaat
ggccgtatgactggggacagtcgcctggtgggtcagaaagcaaaaggaaggggattgaat
caacttggaactcttggatctggaaaccattacttagaggtgcaatatgttgacgaggta
tatgacacggaaaaggcagaggtgatggggataagaaagaaacagatagtcttgatgatt
catagtggaagtagaggacttgggcacagaatatgccacgactcactgatgagaatggcg
aggatgagtactggatatggtcagcttgcatgctctccctacaactccaaagaatcccag
gaataccttctatctatgggatgtgcagcaaactttgcctttgtcaacagagcaatgata
actaagaaggctagacaagcgtttgaaagggtgtttccggaagcaaggcttgatctgatt
tatgatgtttgtcacaacattgcaaagatagagagccataagatcaatgggatggaatac
gatgccatcgtacacagaaaaggtgcctccagagcatttcctccaggccatcgagatatt
ccatggaagtacaaggagatggggcagccagtggtggtgggaggatccatgggcacatat
agctacatcttatgtggttcggagaaatccatggaattgagcttcggatcatcatgccat
ggagcaggacgtgttctctctagaggcaagtcaaaggatttatttacccataagaatgta
tgtgatcttctaagggatcaagacatagtattcaggtgtcctagcgaccctgggatggtt
gaagaatcacctggatgttataaagacatcaatagagttgttgatttaagtgatagaatc
gggttgacaaagaaggtttgccgactaaagccatgcctagtcattaaaggctaa
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