Encephalitozoon romaleae: EROM_040850
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Entry
EROM_040850 CDS
T03458
Name
(RefSeq) Ski2 ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ero
Encephalitozoon romaleae
Pathway
ero03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ero00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EROM_040850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ero03019
]
EROM_040850
03041 Spliceosome [BR:
ero03041
]
EROM_040850
03009 Ribosome biogenesis [BR:
ero03009
]
EROM_040850
03016 Transfer RNA biogenesis [BR:
ero03016
]
EROM_040850
Enzymes [BR:
ero01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EROM_040850
Messenger RNA biogenesis [BR:
ero03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EROM_040850
Spliceosome [BR:
ero03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EROM_040850
Complex C
U4/U6.U5 tri-SnRNP related factors
EROM_040850
Ribosome biogenesis [BR:
ero03009
]
Eukaryotic type
Pre-60S particles
Helicases
EROM_040850
Transfer RNA biogenesis [BR:
ero03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EROM_040850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
20521149
NCBI-ProteinID:
XP_009264350
UniProt:
I6ZI13
LinkDB
All DBs
Position
IV:complement(<102266..>105067)
Genome browser
AA seq
933 aa
AA seq
DB search
MIEDKYFDILNEGLPSQDIVIPERLEKRTMVTDKVDRNGTRHEAVIPVGTAYTPLPKEFA
APSAKNYLFELDDFQKISVCSLERDESVLVSAHTSSGKTVVAEYAIAMSLKSKQRVVYTS
PIKALSNQKYRELLSEFGDVGLMTGDVTINPTATCLVMTTEILRNMLYKGGEVVREIHWI
IFDEIHYMRDKERGVVWEETIILLPRHVRMVFLSATIPNALEFAEWICHIQNQVVHVVYT
EKRVTPLVHYFRTNKLYKIKDKKFHKSSFLSAMRSIQKRAVGPREVSEAISDASLPVVVF
SFRRKDCEKFAMKLDKSYLGDSEAKMVQTIFTNAIMSLRKEDREIPIIQNILPLLMRGIG
IHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGESMRLVS
SGEYIQMSGRAGRRGIDSMGIVISIISEPITYKEVCKLFSSSSDNLVSAFRLTYNMLLNL
MRVEGLDPLYLISRSFHHFQSYKKALAEEETLYSMHRQLENICPNGIVTLYRIREEKKVE
RNKRLSEEFSKYLKKGRVVDLFIPRNGPSITIRNAIVSKVQEKVLCMVGTDEGVYMCGFP
LYYVDCVYDSRVKLDMRVFTRSFEKITVEDELDKEIGEIESKILSIDPKWSFDFCMICGK
PSMGCLVSCSKELISKDAVMVQVPENGRNYRENPKQSRWLDTKMKGEIGEARSYFMNEIL
KQQCMDKLLELKGLKEIYHMRECKKMIEVLKKLEYCNDTSVLIKGRMACEISSGDELVLT
EMIFNGDFAGIPVEHFVPLLSCIVFEEWDSDNFVLSDENKLYYKLLSSSVEKVCGVLKSC
SIDVDPAAYLRRFSYELMDVVRMWVCGHTFVSICSRTNIFEGSIIRTFKRLEELLRQLSS
AARVIGNTELENMFALGIAKIKRDIVFANSLYI
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagacaaatacttcgatatccttaacgaaggcctaccatcgcaagacattgtt
attcccgaaagactagagaaaagaaccatggtgaccgataaggtggatagaaatggaacg
cgccatgaagctgtcatccccgttggcacggcttatactcctttgccgaaagagtttgct
gctccatcggcaaagaactacttatttgaattggacgacttccagaagatttctgtatgt
agtcttgaaagagatgaaagtgtccttgtaagtgcacatacaagttctgggaaaactgtt
gttgcagaatacgccattgcaatgtcattgaagagtaagcaaagagttgtgtacacatct
ccgatcaaagcattatctaaccagaagtacagggagcttctttccgagtttggcgatgtg
ggcctaatgacaggagatgtcaccatcaacccgacagcaacgtgccttgtgatgacgaca
gagattcttcgtaacatgctctataagggaggcgaggtggttcgtgagatccactggatt
atctttgacgagatacattatatgagagacaaagaaagaggagttgtctgggaggagacc
atcatattgcttccaaggcatgttcggatggtgtttctcagtgcaacgattccaaatgca
ttagagtttgcagaatggatatgccatatccaaaatcaggttgttcatgttgtttacacc
gagaagagggtgacacctcttgtccattacttccgcacaaataagctgtacaagatcaag
gacaagaagttccacaaatcaagttttttatctgcaatgagatcgatccagaagagagct
gtcgggccccgagaggtaagcgaagcaataagtgatgcatctcttcctgttgttgtgttt
tcattcagaagaaaggactgcgagaagtttgcgatgaagctagacaaaagctatctcggg
gactccgaagcaaagatggtacagacgatatttactaatgccatcatgtctctccgaaag
gaggatcgagagattccgattatccaaaacatccttcctcttcttatgagaggaattggg
attcatcactccgggcttcttcccataatcaaggaggttgtggagatactgtttcaggaa
gggttactgaaggtactctttgcaacagagacattttcgattgggctcaatatgcctgca
aagtctgtggtgtttactgcactgaagaaatttgatggagaatccatgaggctggtgagt
tctggagagtatattcaaatgagcggaagggcagggagaagaggaatagatagcatgggg
attgtgataagtataatatccgagcccattacctacaaagaggtttgtaagctcttttcc
tcatcctcggataatcttgtgagtgcattccgactgacatataacatgttattgaacctg
atgagggttgaaggccttgacccgttatatctgatcagtagaagcttccatcatttccaa
tcatacaagaaggctctagccgaggaggaaactttgtactcgatgcaccgacaactagaa
aacatttgccccaacgggattgtgacactgtatagaataagagaggaaaagaaggttgaa
agaaacaaaagactatctgaggaattcagcaagtatttgaagaagggaagggttgttgat
ttgtttatacctaggaatgggccatccatcacaataaggaatgcgatagtcagcaaggtc
caggagaaggtcctttgcatggttgggactgatgaaggagtgtacatgtgtgggtttccc
ttgtactacgttgactgtgtatacgatagtagagtgaagttagatatgagagtgtttact
cggagctttgagaagattacagttgaagatgagttagacaaggagataggagagatagag
tctaaaatattgtccatagatcctaagtggagttttgacttctgtatgatatgcggaaag
ccctccatgggatgcttagtctcgtgcagtaaggagttgattagtaaagatgcagttatg
gtccaagttcctgagaacggaaggaattacagggagaatcccaagcagtcgagatggtta
gatacaaagatgaaaggtgagataggagaagcaaggtcgtacttcatgaatgagatactg
aagcagcaatgtatggataaacttcttgagctcaaaggccttaaagagatttatcacatg
agagaatgcaagaaaatgatcgaggttttgaagaagcttgaatactgcaacgacactagc
gtacttataaagggaagaatggcatgtgagatttcatctggtgacgagcttgttcttacg
gaaatgatattcaatggagactttgcaggaattccagtggagcactttgttccattgctg
tcatgcattgtatttgaggaatgggactccgataactttgtcttgagtgacgaaaacaag
ctatattacaaattgctgtcttcctctgtagagaaggtttgtggtgttctgaagtcatgt
tctattgatgtagatcctgcagcatatctcagaaggttttcttatgagctgatggatgtt
gttcggatgtgggtgtgtggacatacgtttgtcagtatctgtagccggacaaatatattt
gagggaagtatcatcaggacgtttaagaggcttgaggagcttcttaggcaattgagtagc
gcagccagagtcataggcaacactgaattggagaacatgtttgcattgggaatagcaaag
atcaagagagacatagtctttgctaactctctttatatttag
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