Erwinia rhapontici: LJN55_02355
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Entry
LJN55_02355 CDS
T08392
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
erp
Erwinia rhapontici
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erp03019
]
LJN55_02355 (csrD)
Messenger RNA biogenesis [BR:
erp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LJN55_02355 (csrD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
DUF1589
Motif
Other DBs
NCBI-ProteinID:
UDQ80722
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All DBs
Position
515485..517434
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AA seq
649 aa
AA seq
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MRLTTKLSAIITLLCSLAMLLMLVGCVLSFFYLSNQRAEHRIQRMADDVDSALFTQSPQQ
IEAWLRQVMNPLQIERVKLNNGNAQLFQVTLHQPSLLEDEPNRYRQIQLPLTQHPGMTLH
IQWVDSTRTWFASLMGVTSLSLIIGVVAIMTLLLWQARRWLQQQLQGMERLEERAEAVIK
GERATVKSGSVHEWPPKASSAIDLLLADLKEAGEQHNRIDTLIRAFAAQDARTGLNNRLF
FDNQLTTLLEDPESVGTHGMVMMIRLPDFDSLRERWGHVQVQDYLFALVNMLSTFVLRYP
GALLARYFRSDFAVLLPHRSVKDADGIASQLIKAVDTLPSTRMLDRDDMIHIGISGWHSG
QSTLQVMENAERATRNATLQGGNNWSVGEGAQQDFARGSVKWRTLLENTLNRGGPRLYQK
PAVNAKGEVHHREMMPRIFDGEKELLSAEYLPVIQQLGLAERYDRQMVKRIVTLIELWPE
ETLAIPLTLDSLLQRSFLNWLRDNLLQCTKSQRKRILFELAEADVCQHISRLTPVFRLLY
GFGCGVAVNQAGLTVVSTAYIKQFQVRLIKLHPGLVRNIDRRTENQLFVQSLLESSKQTS
TQVFAAGVRSREEWQTLLELGVTGGQGDFFAASEPVNSSVKKYSQRYRV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcgactaaccaccaaactttctgcgattatcaccctgctttgctcactggccatgtta
ctgatgctggtgggctgcgtactgagcttcttttatcttagtaaccagcgggcagaacat
cggatccagcggatggcggacgatgttgatagcgcgttattcacacaatccccccaacag
atagaagcatggctacgtcaggtcatgaatccgttacaaatcgaacgcgttaaactgaac
aacggtaatgcgcaactgtttcaggtcacccttcatcagccgtccctcctggaagacgaa
cctaatcgctatcgccagatacagcttccgctgacgcaacatcccggcatgacactgcat
attcagtgggtcgactccacccgtacctggtttgcttccttaatgggggttaccagtttg
tcgctaattatcggcgtggtcgcgatcatgactttattgctatggcaggccaggcgctgg
ctccagcagcaattacaaggaatggaacggctggaggagcgcgctgaagccgtgatcaaa
ggagaacgcgctacggtcaaatcgggttcagtacatgagtggccgcctaaagccagcagc
gcaattgacctgttgctggccgatctgaaagaggcaggagagcagcataaccgcattgat
acgctgatccgcgcatttgcggcacaggatgcccgcaccggcctgaacaaccgcctgttc
tttgataatcagctcaccacactgttggaggatccggagtccgttggaacgcatggcatg
gtgatgatgatccgcttgccagatttcgacagcctgcgtgagcgctggggccatgtgcag
gtgcaggattatctgtttgcgctggtcaatatgctgtcgacttttgtgctgcgctatccc
ggtgcgctgctggctcgctattttcgcagtgacttcgccgtattgctcccacatcgcagc
gtaaaggatgccgacggtattgcttctcagttgattaaagcggtcgatactctgccatca
acgcgaatgttggatcgtgatgacatgattcatattggtatcagcggctggcacagcggg
cagagcactcttcaggtgatggagaatgccgagcgggcaacgcgtaacgccacactacag
ggcgggaataactggtcggtgggcgagggggcacagcaggatttcgcgcgcggaagcgtg
aaatggcgcacattgctggaaaacacactgaatcgtggtggtccacggctttatcaaaaa
ccggccgttaacgcgaagggtgaagtgcatcatcgcgaaatgatgccacgcatctttgac
ggtgaaaaagagctgttatccgcagagtatctgcctgtgattcagcaactgggtctggca
gaacgctacgatcgacagatggtgaaacgtattgtgacgttgatcgaactgtggccagaa
gaaactcttgccattccgctcaccctcgactcattattgcagcgctcattcctgaactgg
ctgcgtgataacctgctgcaatgtactaaatcgcaaagaaaacgtattttatttgaactt
gcagaagcagatgtgtgtcaacacatcagccgtttaacgccagtgttccgattgctctac
ggttttggctgtggtgtggcagtgaatcaggccggtttaacggtagtgagcaccgcgtat
atcaagcagttccaggtcaggctgatcaagcttcatcccggcctggtgcgcaatattgat
cggcgtactgaaaatcagctgtttgtacaaagcctgctggagagtagcaagcaaacttcc
actcaggtttttgctgccggggtacgttcccgggaagagtggcaaacgctgttggagctg
ggagtcaccggtgggcagggcgactttttcgctgcctcagagccggttaatagtagcgtg
aaaaaatattcgcaaagatatcgagtttag
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