Erwinia rhapontici: LJN55_02530
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Entry
LJN55_02530 CDS
T08392
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
erp
Erwinia rhapontici
Pathway
erp02020
Two-component system
erp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LJN55_02530 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LJN55_02530 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erp03021
]
LJN55_02530 (rpoN)
Transcription machinery [BR:
erp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LJN55_02530 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
UDQ80756
LinkDB
All DBs
Position
complement(559029..560462)
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDIHEEVDTRE
YQETEALDTREALEQKDMPEELPLDATWDEIYTAGTPSGTGTDYHDDELPVYQGETTQTL
QDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTVSLEEVLESMGNDELTLDEVEAVLK
RVQRFDPVGVCARDLRDCLLVQLSQFAADVPLLKEARLIVSEHLDLLANHDFRSLMRVTR
LKEDVLKGAMQVIQTLDPRPGQSINTQEPEYVIPDVLVRKVSNRWMVELNADSVPRLKIN
QHYASLGSSSRSDSDSQFIRSNLQEAKWLIKSLESRNDTLLKVTRCIVDQQQAFFEQGEE
YMRPMVLADIASAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLISAENPVKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttacaactcaggctgagtcaacagcttgccatgacgccacaactgcag
caggccattcgcctgctgcaactctctacgcttgaactacagcaggaaattcagctggcg
ctggaaagtaacccgttgcttgaacagaccgacattcacgaagaagttgatacccgcgaa
tatcaggaaacagaagcgctggatacccgggaagcgctggaacagaaagacatgcccgag
gagcttccactggatgcgacctgggatgaaatctacaccgctggtacgccgtcaggcacg
ggtaccgattaccatgacgatgagttacctgtttatcagggtgaaacgacccagacacta
caggactatctgatgtggcaggtggagctaacgccttttaccgataccgatcgcgcgatt
gcgacctccattgtcgatgctgtcgacgatacgggctatctgaccgtgtcgctcgaggaa
gtgcttgaaagtatgggtaacgacgagctgacccttgacgaagtggaagcagtgctgaaa
cgtgtacagcgttttgatccagtaggcgtctgcgcccgcgatctgcgcgactgtttactg
gtacagctctcccagtttgcggcagatgtgccgctgctgaaagaagcacggctgattgtc
agtgagcatctcgacctgctcgccaaccatgatttccgcagcctgatgcgcgtcacacgc
cttaaagaagacgtgctgaagggagcgatgcaggtcattcaaacgcttgacccgcgccca
ggccaatcgatcaatactcaggaacccgagtatgtcattccagatgtgctggtgcgtaaa
gtcagtaatcgctggatggtcgagttgaatgcagacagtgtgccgcgtctgaagattaat
cagcattacgcttcactaggctcaagttcacgcagcgacagtgattcgcagtttatccgc
agtaatttgcaggaagccaagtggctgattaaaagcctggaaagccgaaatgatacgctg
ctgaaagtgacacgctgtatcgtggatcagcagcaggcctttttcgaacagggcgaagag
tatatgcgcccaatggtgctggctgatattgccagtgccgtcgaaatgcatgaatcgacc
atttcccgtgttaccacccagaaatacctgcacagtccacgtggtatttttgaacttaag
tattttttctccagtcacgtcaataccgaaggagggggcgaagcgtcctcaacggcgatc
cgtgcactggtgaaaaaattaatctcggcggagaatcccgtcaaaccactcagcgacagc
aagctcacctccatgctttccgaacagggaattatggtggcacggcgcactgtggcaaaa
taccgagagtctttatccatcccgccatcaaatcagcgcaaacagctggtctga
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