Erwinia rhapontici: LJN55_02760
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Entry
LJN55_02760 CDS
T08392
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
erp
Erwinia rhapontici
Pathway
erp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJN55_02760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erp03019
]
LJN55_02760
03009 Ribosome biogenesis [BR:
erp03009
]
LJN55_02760
Enzymes [BR:
erp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LJN55_02760
Messenger RNA biogenesis [BR:
erp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJN55_02760
Ribosome biogenesis [BR:
erp03009
]
Prokaryotic type
rRNA helicases
LJN55_02760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDQ80797
LinkDB
All DBs
Position
600718..602649
Genome browser
AA seq
643 aa
AA seq
DB search
MTDIQTTFADLGLNADLLESLTGMGYVKPSPIQLECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAMTEFAKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDN
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALTRFLE
SEDFDAAIIFVRTKSATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLEQYRALLAKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPQRPRSQFRDRDDSRDNRRGDRPDRGPREPREARSGEARG
DAPRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLSHFTRTRILNKPMNMQLIGDAQPRSNDRGGERRPGGPARGGFGSGAGREGG
APRGGAEGGRRFSNDRGGERRPGGTSRGPRTEGGAAPTRRRDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaactacttttgctgaccttggcctgaacgccgacctcctcgaatca
ctgaccggcatgggctacgttaagccatctccaatccagcttgagtgtattcctcatctg
ctggctggccgtgatgttctgggtatggcacagaccggcagtggcaaaactgcagcattc
tcgctgcctttattacacaacattgaccctaccgttaaagcgccacagattctggtgctg
gcaccgacccgcgaactggcggttcaggttgctgaagcgatgaccgaattcgccaaacac
atgcgcggtctgaacgtggtggccctttacggcggccagcgttacgacgtgcagctgcgt
gctctgcgtcagggaccacaggttgttgtgggtacacctggccgtttgcttgaccacctg
aaacgcggcacgttagacctgtctaacctgcgcggtctggtgctggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaactatcatggctcagatcccagacaat
catcagactgctctgttctctgctaccatgccagaagcgattcgccgcattaccaaacgc
ttcatgaaagatccgcaggaagtgcgtatccagtcaagcatgacgacacgtcctgatatc
agccagagctactggactgcctatggccgtaaaactgatgcactgactcgtttcctggaa
tctgaagactttgatgctgcaatcatcttcgtgcgtaccaaaagcgctacgctggaagtg
gctgaagcgctggagcgtagcggttacaacagtgctgcactgaatggtgacatgaaccag
gcactgcgtgagcagacgctggagcgtctgaaagatggtcgtctggacatcctgatcgcg
actgacgttgctgcccgtggtctggacgttgagcgtatcagcctggttgttaactatgac
atcccgatggacgcagaatcttacgttcaccgtatcggccgtaccggtcgtgcgggtcgt
gcgggtcgtgctctgctgttcgttgagaaccgtgagcgtcgcctgctgcgtaacatcgaa
cgcaccatgaagctgactattccagaagtagaactgccaaatgcagaactgctgggtgaa
cgtcgtctggctaagtttgctgctaaagttcagcagcagctggaaagcagcgatctggag
cagtaccgtgctctgctggctaaaatgcagccagaagaagagctggatatcgaaacactg
gccgccgcactgctgaaaatggctcagggcgaacgtccactgatcgttccagctgatgca
ccacagcgtccacgcagccagttccgtgaccgtgatgacagccgtgacaatcgccgtggt
gaccgtccggaccgtggtccacgtgaaccacgcgaagctcgcagtggtgaagcacgtggt
gatgcgccgcgtcgtgaacgtcgtgatgttggcgatatggaagtgtaccgcattgaagtg
ggccgtgatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgat
atcagcagccgttacatcggtaacatcaagctgttcggtactcactctactatcgaactg
ccaaaaggcatgccgggcgaagttctgtcacacttcactcgtacgcgtattctgaacaaa
cccatgaatatgcagctgattggtgatgcacagccacgcagcaatgaccgtggcggcgaa
cgtcgtccaggcggccctgcacgtggtggcttcggctctggcgcaggtcgtgaaggcggc
gctccacgcggtggtgctgaaggcggtcgtcgtttcagcaatgaccgtggcggcgaacgt
cgtccaggtggcaccagccgtggtccacgcactgaaggcggcgcagcacctacccgtcgt
cgtgatgcgtaa
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