Erwinia rhapontici: LJN55_04905
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Entry
LJN55_04905 CDS
T08392
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
erp
Erwinia rhapontici
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erp03400
]
LJN55_04905
DNA repair and recombination proteins [BR:
erp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LJN55_04905
Archaeal homologous recombinant proteins
LJN55_04905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
AAA_21
FliJ
cobW
NTPase_1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UDQ81202
LinkDB
All DBs
Position
complement(1045993..1049352)
Genome browser
AA seq
1119 aa
AA seq
DB search
MKILTLRFKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LKGITQSQNDLMTRDTAECLAEVEFEVKGVAWRAFWSQSRARGAADGNLQAPRVELARCS
DNHIVADKVKDKLERVASLTGLDFERFTKSMMLSQGQFAAFLNADANKRAELLEELTGTE
IYGRLSAAVFDRHKQAKVTLDTLRAQSSGMSLLTEEQCALLNSQLAQSVEQEQVLTSQQQ
IQLKKSQELQQIERLQREQQQLTVSAQQLDQQREQAQQALILATQQQEQIVQAQAQHQTL
RLQQETLIAEQVLPLDLQLATLREQQQQLERERSEHQLALTTRQQESAKNQQTQQDKQAQ
QQQLNAWREAHPSFAHYGEHLPLWRERFSQQQDSEQSLTAQRLRLQAQQRQVQECEQSSQ
QFQQQQAPLQQQLAAAQTSLDQVQQQLASLQQLHPEETLRAALEQFARQRPQRLLLATLL
PQWQQLNIRLTRLQQERQTLTQQIQQKSEQLLTLRASWKEKYQHQQDLEKRCELERRIAD
LEQHRAQLEAGQPCPLCGSENHPAVQQYQALQLSENQQRLDALKRDVEQLKDQGSTCAAQ
LKQAQQQDERQLQEEAELNRQMQQLEQQWQSATAALALSLSPQQHQQTSDWLAQQDEQET
AKQQQLQQLEQALRHCQQQKEALYQHQQAWQALQQQIQLQQQQFTAATQTQSEQQQQLTL
DEQRAQQLRIKLAEGVAPLGLTLPQDGDYQRWLQLRETEWQQWRSNSEALAALVPELATL
SSRQQALEEELQQQQARLAQLDQRLQQQQETLKHCQQQRQALFGDRDVTTAQQQLRTETE
QHAQAVRQAQTAWQQQQDRINTLTGQHKSLNEQLINLQSQLDEMVNQSGHFDDLPAQRIL
LESQLSELNQQLRELASQQGQLRQQLRDDSERRTQQQTLLAEIAANEQQLEDWSYLNQLI
GSKEGDKFRRFAQGLTLDHLVWLANNQLNRLHGRYLLQRKSQEALELQVVDTWQADAQRD
TRTLSGGESFLVSLALALALSDLVSHKTRIESLFLDEGFGTLDAETLDSALDALDALNAS
GKTIGVISHVEAMKERIPVQIKVKKINGLGYSRLETPGQ
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctgacgctgcgctttaaaaacctcaactcgctgaagggggagtggaaaatc
gacttcaccgcagaaccttttgccagcaacggcctgttcgccattaccggcccgacgggc
gcaggtaaaaccaccctgctggatgccatctgcctcgcgttgtatcacgaaacaccgcgc
ctgaaaggcatcactcagtcgcaaaatgacctgatgacccgtgataccgccgagtgcctg
gcagaagtggaatttgaggtgaaaggtgttgcctggcgcgctttctggagccagagccgc
gctcgcggcgccgccgatggcaacctgcaggcaccgcgggttgagctggcacgctgtagc
gataatcacatcgtggccgacaaggtcaaagataagctggagagggtagccagcctgacc
gggctggacttcgaacgcttcaccaaatcgatgatgctgtcacaagggcagtttgccgcg
ttcctcaatgccgatgccaataaacgtgccgagctactggaagagctgaccggcaccgaa
atatacggtcgactgtcggcggcggtgtttgatcgccataaacaggcgaaggtgacgctg
gataccctgcgcgcccagtccagcggtatgagtttgctcaccgaagagcagtgcgccctc
cttaacagccagttggcacaaagtgtggagcaggagcaggtgcttacttcacaacagcag
atccaactgaaaaaaagtcaggaactgcaacagattgaacgcttgcaacgggagcagcaa
cagctgaccgtcagcgcgcagcagctggatcaacagcgggagcaggcacagcaggcgctg
attctggccacgcagcagcaagagcagatcgtgcaggcgcaggcgcaacaccagacgctg
cgtttgcaacaggaaaccctgatcgccgaacaggtcctgccgcttgacttgcagctggcc
acattacgcgaacagcaacagcagctggagcgagagcgaagtgaacaccaacttgcgctc
accacacgccagcaggaaagcgctaaaaaccagcaaactcagcaggacaaacaggcgcag
cagcagcagctcaatgcctggcgtgaagcacatccgtcgtttgcacattacggcgagcat
ctgccgctgtggcgtgaacgctttagccagcagcaggatagtgagcagtcactgaccgca
caacgcttgcgactccaggcccagcagcgccaggtacaggagtgtgagcagtccagccag
cagttccagcagcagcaggccccgttacagcagcagctggccgccgcacagaccagcctc
gatcaagtgcagcaacagctggcctcgctacaacagctgcaccccgaagagacgctgcgc
gccgccctggagcaatttgcccgccagcgcccgcagcggttattgctggccaccctgctc
ccgcagtggcagcagttgaacatacgcctcacgcgcttacagcaggagcgccaaacgcta
acgcaacagatccagcaaaaaagtgagcagttacttaccctgcgggccagctggaaagag
aaatatcaacatcagcaggacctggaaaagcgctgtgagctggagcggcgtattgccgat
ctggaacagcaccgggcacagctggaagcgggccagccctgcccgctgtgcggttcagaa
aaccatccggccgtacagcagtatcaggcgttacagctgtcggaaaatcagcagcggctg
gacgcattaaagcgtgatgttgaacagcttaaagatcagggcagtacctgcgccgcgcag
cttaaacaggcgcaacagcaggacgagcgccagttgcaggaagaggcggaactgaaccgt
cagatgcagcaactggagcagcaatggcagtccgccaccgccgccctggcgctgtcactc
agcccgcagcagcatcaacagaccagcgactggctggcacagcaggatgagcaggaaacg
gcaaagcagcagcagttacagcagctggagcaagcgttgcgccactgccagcagcaaaaa
gaggcgctgtatcagcatcagcaggcctggcaggccctgcaacagcagatccagcttcag
cagcagcagtttactgccgccacgcagacgcagagcgaacagcagcaacagctcaccctg
gatgaacagcgcgcacaacagttgcgcatcaagctggcagaaggggttgcaccgctgggg
ctgacactgccgcaggatggtgattaccagcgctggttgcagctgcgcgaaacggagtgg
caacagtggcgcagcaacagcgaggcgctggctgcgctggtccctgaactggcgacactc
tccagccgccaacaggcgctggaagaagagttacaacaacaacaggcacgcctggctcag
ctcgaccagcgtctgcaacaacagcaggaaacgctgaagcactgccagcagcagcgccag
gcattgtttggcgatcgcgacgttacgactgcacagcagcagctgcgaacagagacggaa
cagcatgcgcaggccgttcgccaggcgcagactgcgtggcaacagcagcaggacaggata
aataccctgaccggacagcataaatcactaaatgagcagttgattaatctacaatcgcaa
ttagacgaaatggtgaaccaatcaggccattttgatgacctgcctgcacaacggatacta
ctggaaagccagctgagtgagttaaatcagcaactgcgcgagctggccagccagcagggt
cagctacgtcagcagctgcgagatgacagcgaacggcgcacacaacagcagacattgctg
gctgagatcgccgctaacgaacagcagctggaagactggagctacctcaatcagcttatc
ggttccaaagaaggggataaattccgccgctttgcccaggggctgacgttagatcatctg
gtgtggctggccaacaatcagcttaaccgtctgcacggtcgctatctgttgcagcgcaaa
tcgcaggaagcgttagagcttcaggttgttgatacctggcaggctgacgcacagcgtgat
acccgtacgctgtccggcggcgaaagcttccttgtcagtctggcgctggcgctggccctt
tccgatctggtcagccataaaacccgtattgagtcactgttcctggatgaaggctttggc
acgctggatgcggaaacactcgacagtgcgcttgatgcgctggatgcgctcaatgccagt
ggcaaaacgattggggtaatcagccacgttgaggcaatgaaggaacgtattccggtgcag
ataaaggtgaaaaagattaacggactgggttacagcagactggaaacaccggggcaatag
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integrated database retrieval system
