Erwinia rhapontici: LJN55_09080
Help
Entry
LJN55_09080 CDS
T08392
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
erp
Erwinia rhapontici
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
erp03000
]
LJN55_09080
Transcription factors [BR:
erp03000
]
Prokaryotic type
Helix-turn-helix
Other families
LJN55_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
PAS_4
HTH_23
HTH_50
AAA_5
HTH_7
HTH_30
HTH_AsnC-type
Mg_chelatase
AAA_16
HTH_28
CPPA
HTH_29
Sigma70_r4
HTH_Tnp_ISL3
HTH_22
PAS_8
HTH_AraC
HTH_24
HTH_11
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UDQ81965
LinkDB
All DBs
Position
1910576..1912522
Genome browser
AA seq
648 aa
AA seq
DB search
MNQSQREHIATVLACTREDTRHLAQLRHDQAIHDSWQRCVINHGLDPSRMQAARILPWQE
LREHREHLEEFRHIARHGLSRLYQQIAPAGYVVLLTDAHGVTVDYLGDDSAEISLRRAGL
FLGAQWSEAWAGTCAVGTALATGKPLTVHHNDHFDATHIALSCSAVPLFDPQGQLNAILD
ISALTSPQPKSGQQLALQIARMHAHQIENAWFEHRHRADWVLKLSPSSPFVEVSPDYLIA
FDADGRVIGHNHRAQRMLEKELGIDAPLPHCRSTLLGMPIEQLFNTSIDSLPDWLASASG
RQGTLDRLHSGERLYVTAVQPARRPERTAITTPAALPAPLAALTGGDPTLQQQLQRAARL
LSAPLHLVVQGETGSGKEYFARAFHQSSQRSGQPFIAVNCAAIPATLIESVLFGHLPGSF
SGAGSKARRGLVQEADGGTLFLDEIGDMPLEMQTRLLRVLAEQEVLPVGASRPVAVDIRV
ISASHHVLEELVEQGRFRADLFWRLQGARITLPALRNRQDLDWLIDNMLAGKARLSAAAR
QCLHQHGWPGNLRELSNALDYAVAMADGDTIDAGDLPDGIGISAPLTLIQARSAEGQALP
DEGQQLVALLRAARWNHSAVARQLGISRMTLYRRMQRYGIQSPNTQPA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcagagtcagcgtgaacatattgccaccgtgcttgcctgcacccgcgaagatacc
cggcatctggcgcagcttcggcatgaccaggccatccatgactcctggcaacgctgcgtt
atcaaccatggtcttgatcccagccgtatgcaggcggcgcgcattctcccctggcaggag
ctgcgtgagcatcgcgagcatcttgaagagtttcgccatattgcccggcacggtttgagc
cggttataccagcagattgccccggcgggctatgtggtgttgctgacggatgcccacggg
gtgacggtggactatctgggggatgacagcgctgaaatcagcctgcgtcgcgctggcctg
ttcctgggggcgcaatggtcggaagcctgggcgggcacctgtgcggttggcacggcgctg
gcgaccgggaaaccgctgaccgtacatcacaacgaccattttgatgccacgcatatcgcg
ctctcctgctcggccgtgccgctgttcgatccgcaggggcagcttaacgcgatcctggat
atctccgcactgacctcgccgcagccgaaatccggccagcagctggcgttacagatagca
cggatgcatgcccaccagattgaaaatgcctggttcgagcatcgtcaccgtgccgactgg
gtgctgaaactcagcccgtcctcgccgtttgtcgaggtcagcccggattaccttattgct
tttgatgccgatggccgggtgatcggccataaccaccgtgcgcagcggatgctggagaaa
gagctgggcattgatgcgccgttaccgcactgccgcagcacgctgctcgggatgccgatt
gaacagctgtttaatacttcgatagacagtttgccggactggctggccagcgccagcggt
cgtcagggcacgctggatcggctgcacagcggtgagcggctatatgtgacggcggtgcag
cccgcacgccgcccggagcgcacggcgatcaccacgcccgccgcactgcctgcgccgctg
gcagcgctgacgggcggcgatccgacattgcagcaacagttacagcgtgcagcacgcctg
ctgagtgcgccgctgcacctggtggtgcagggggaaacgggcagcggcaaagagtatttt
gcccgcgctttccatcagtccagccagcgcagtgggcagccgtttattgcggtgaactgt
gccgcaatccccgcgaccttgattgaaagtgtgctgtttggtcatctgccaggcagtttc
tccggggcgggcagcaaagcgcggcgcggcctggttcaggaagccgacggcggcacgctg
ttccttgatgagatcggtgatatgccgctggagatgcagacgcggttgctgcgcgtgctg
gccgagcaggaggtgctgccggtcggggcttcgcgcccggttgcggtggatatccgtgtg
atttcggcttcacatcatgtgcttgaggaactggtggagcagggtcgtttccgcgccgat
ctgttctggcgtttgcagggggcgcgtatcaccttgcctgcgctacgcaatcgtcaggat
ctcgactggttaatcgacaacatgctggcgggcaaagcccgactgtcagcggcggcgcgt
cagtgcctgcatcagcatggctggccgggtaacctgcgtgaactgagcaatgcgctggat
tacgccgtggcgatggccgatggcgacacgattgacgctggcgatctgcctgacggcatc
ggcattagcgcaccgctgacgttaattcaggcgcgttcggcagagggacaggcactgccg
gatgaaggccagcagctggttgccctgctgcgtgctgcacgctggaaccacagcgccgtg
gcgcgtcagctgggcatcagccggatgacgctgtatcgccggatgcagcgttacggcatt
cagtcgcccaatacgcagcctgcatag
DBGET
integrated database retrieval system
