Erwinia rhapontici: LJN55_11040
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Entry
LJN55_11040 CDS
T08392
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
erp
Erwinia rhapontici
Pathway
erp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LJN55_11040 (pdeR)
Enzymes [BR:
erp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
LJN55_11040 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
DUF3612
DUF1186
Motif
Other DBs
NCBI-ProteinID:
UDQ82321
LinkDB
All DBs
Position
complement(2340758..2342749)
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AA seq
663 aa
AA seq
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MTDEQGQTLLYAYFGTSSPHWRLSSDSDALHFAEDEGGETNIAVPLTPPQASLLRSMTVI
TTSVNLTITLYGNALSMHLVGRKVSQIAWAGTASAWGDTSSVARDLVLGLSFAEQVVSEA
NSVIVIVDQQGHIQRFNRLSEEYTGLKEQEVIGRNVFQLFMSRQEAAASRRNISMFFREG
SSYEVERWIKTKKGQRLFLFRNKFVHSGSGKNEIYLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAINHEITEALEKRANQQIGVVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLDKDQTLARLGGDEFIVLAEDTSQAALEAMSSRILERLKQPFRIGLIEVYSGCSVGI
ALAPQHGEDRESLIRNADTAMYTAKENGRGKFCIFSAEMNQRVFEYLWLDTNLRKALEHH
QLVLHYQPKVNADGTVTSVEALVRWMSPERGLVPPDSFIAYAEESGLIIPLGRWVILSAL
EQIIRWRKQGIDLRVAVNVSPRQLIDQSIYTDLKLALDQAGLEVCPIDIELTESCLIENE
EQALALMKQFQKLGAAVHLDDFGTGYSSLSQLARVPIDAIKLDQSFIRGVNQQVVSQSLV
RAIVAVAKALNLQVIAEGIETEEEAEFVMANGVDTRQGFLYAKPMPAEELEHWLTRHHAI
TAS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacaagggcagacgctactgtatgcatattttggcaccagcagccctcat
tggcgtttatcctccgacagcgatgcgctgcattttgccgaagacgaagggggcgaaacc
aacattgccgtcccgctcactcccccgcaagccagcctgttgcgcagcatgacggtgatc
accaccagcgtgaatctcaccatcacgttgtacggtaatgcactgtccatgcatctggtc
ggcaggaaagtctcccagattgcctgggcggggaccgcgtcagcatggggagacacttcc
tcggtcgcgcgcgatctggtgctgggtctgtcatttgcagaacaggtggtatctgaagcc
aattccgtcattgtcatcgtcgatcagcaaggtcatatccagcgctttaaccgcctgagt
gaagagtacaccggcctcaaagaacaagaagtgatcggccgtaatgtgtttcagctgttt
atgtcacgccaggaagcggcggcctcacggcgtaatatcagcatgtttttccgtgaaggc
agctcctatgaagtcgagcgttggatcaagacgaagaaaggtcagcgtttgttcctgttc
cgcaataaattcgtccatagcggcagcggaaaaaatgagatctacctgatttgctccggc
acggatattaccgaagagcgccgagcccaggagcgtctgcgcgtgctggccaataccgat
accattaccggcctgccgaatcgcaatgccatcaatcacgaaatcactgaagcactggaa
aaacgtgctaaccagcagattggcgtggtctaccttgatctcgacaatttcaaaaaagtg
aatgatgcctacgggcacatgttcggcgaccagctgttacaggcggtttctctggcgatt
ttgagctgccttgataaagatcagacgctggcgcgcctgggtggcgatgagtttattgtg
ctggccgaagacaccagccaggccgcattagaagcgatgtcgtcgcgtattcttgagcgc
ctgaagcagccgttccgtatcgggctgattgaggtttactccggatgctccgtgggcatt
gcccttgctccgcagcatggcgaagatcgtgaaagcctgatccgcaatgctgatacggcg
atgtacacagcgaaagagaacgggcgcggtaaattctgcattttctcagccgaaatgaat
caacgggtgtttgaatatctctggctcgacaccaacctgcgcaaggcgctggaacatcat
cagttggtgctccactatcagccgaaagtgaatgccgatggcacggtcaccagtgtggaa
gcgctggtacgctggatgtccccagagcgtgggctggtaccgccggacagttttattgcc
tatgccgaagagtcaggattgatcatcccgctgggacgctgggtgatattgagcgcgctg
gagcaaattatacgctggcgcaaacagggcattgacctgcgggtggcggtgaatgtgtcg
ccgcgccagctgattgaccaaagtatctataccgacctgaaactcgccctggatcaagcc
ggactggaggtctgcccgattgatattgagctgaccgaaagctgcctgattgagaatgag
gagcaggcgctggcattaatgaaacagtttcagaaactgggtgcagccgtacatctggat
gatttcggtacgggttattcatcgttgtcacagctggcacgcgtgccgattgatgcgatt
aagctcgaccagagctttatccgtggcgtaaaccagcaggtagtctctcagtcactggtc
agggcgattgttgccgttgctaaggcgctgaacttgcaggtgatcgcggaagggattgag
acggaagaagaagcggagtttgtgatggcgaacggtgtggatacccgtcaggggttcctg
tatgcgaagccaatgcccgctgaagaactcgagcactggcttacgcggcatcatgccatt
acggcttcctga
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