Erwinia rhapontici: LJN55_11050
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Entry
LJN55_11050 CDS
T08392
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
erp
Erwinia rhapontici
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
erp03016
]
LJN55_11050
Enzymes [BR:
erp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LJN55_11050
Transfer RNA biogenesis [BR:
erp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LJN55_11050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
DUF2090
Motif
Other DBs
NCBI-ProteinID:
UDQ82323
LinkDB
All DBs
Position
complement(2345251..2347194)
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AA seq
647 aa
AA seq
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MFQDNPLLAQLKEKLHSQTPRVEGVVKGTEKGFGFLEVDAQKSYFIPPPFMKKVMHGDRV
SAVIQTDKDREVADPETLIEPFLTRFVGRVQKKDDRLSIVPDHPLLRDAIQCRPDRNVKH
DFQAGDWAVAEMRRHPLKGDRSFYAELTEFITTADDHLAPWWVTLSRHNLEREAPDVATP
EEMLDEQLEREDLTALTFVTIDSASTEDMDDALYVEDAADGALKLTIAIADPTAYVPAGS
KLDAVAAERSFTNYLPGFNIPMLPRELSDDICSLRPNERRPVLACRVTIAADGTPGDDIQ
FFAAWIESKSKLAYDNVSDWLETNGTSEWQPESDAIAQQISLLHRLCQARSEWRQTHALV
FKDRPDFRFLLGEKGEVLDIIAEHRRIANRIVEESMILANICAAAVLRDKLGFGIYNVHL
GFDDVNAEQAAAVLANHGVTADPAAIATLEGFRTLRRELDTLPTQFLDSRIRRFQSFAEV
STTPGPHFGLGLDAYATWTSPIRKYGDMVNHRLLKAIIKGEAASRPADDVTVKMGERRRQ
NRMAERDVGDWLYSRFLQKSVGTDQRFSAEVIDVSRGGMRVRLQENGAVAFIPAPFIHAV
RDELVCSNENGTVQIKGDVAYRVTDLIDVTIAEVRMETRSVVARPVV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctaaaagagaaactccactcccaaacgccg
cgtgttgagggtgtggtaaaaggcacggaaaaaggtttcggcttcctggaagtcgatgca
cagaaaagctactttattccgccaccgtttatgaaaaaagtcatgcatggtgaccgcgtt
agcgccgtgattcagaccgacaaggatcgtgaagttgccgaccctgaaacgctgattgaa
cctttcctgacccgttttgttggccgtgttcagaagaaagacgatcgcctgtcgattgtg
cctgatcatccgctgctgagagacgccattcagtgccgccctgaccgtaatgtgaagcat
gacttccaggccggtgactgggcagtggctgagatgcgccgtcatccgctcaaaggcgat
cgcagtttctatgccgaactgaccgaatttattaccactgcggatgaccatctggcaccg
tggtgggtgacgctgtctcgccataatctggagcgtgaagcaccggatgtggcaacgccg
gaagagatgctggacgagcaactggagcgtgaagacctcactgccctaaccttcgtgacc
atcgacagcgccagcaccgaagatatggacgatgcgctgtatgtggaagatgccgccgat
ggcgcgctgaaactgaccattgcgattgccgatcccacggcctatgtgcccgcggggagc
aaactcgatgcggttgccgctgagcgctcgttcactaactacctgcctggttttaacatt
ccgatgctgccgcgcgagctgtctgatgacatctgttcgctgcgtccgaatgagcgacgt
cctgtgctggcctgccgcgtgactatcgccgctgacggcacaccgggagatgacattcaa
ttcttcgcggcctggattgaatctaaatccaagctggcgtacgacaatgtctctgactgg
ctggaaactaacggtaccagtgaatggcagccggaaagcgacgccattgcacaacagatt
agtctgctgcaccgtctgtgccaggcgcgcagcgaatggcgtcagacacatgcgctggtg
ttcaaagaccgccctgacttccgcttcctgttaggcgagaaaggcgaagtgctggatatc
attgccgagcatcgtcgcattgctaaccgcatcgttgaagaatcgatgatcctggccaac
atctgcgcggctgccgtgctgcgcgataagctgggcttcgggatctacaacgtgcacctt
ggtttcgacgacgtgaatgccgagcaggctgccgccgttctggcgaaccacggtgtgacg
gcagatcccgcagccattgccacgctggaaggtttccgcacgctgcgccgcgagctggat
acactgccgactcagttcctcgacagccgtattcgtcgcttccagtcatttgctgaagtc
agcaccacaccaggcccacacttcggccttggtctggatgcctacgcaacctggacctct
ccgatccgtaagtatggcgatatggtgaaccaccgcctgctgaaagcgatcatcaaaggg
gaagcggccagccgccctgcggatgacgtcacggtgaagatgggcgaacgccgccgtcag
aaccgtatggcagagcgcgatgtcggagactggttgtactcgcgtttcctgcagaaatcg
gtcggtactgaccagcgtttcagcgcggaagtgatcgatgtttcccgtggcggtatgcgt
gtacgtcttcaggaaaatggtgcggttgcctttatccctgccccgttcatccacgcggtg
cgtgatgagctggtgtgcagcaacgagaatggcaccgtgcagatcaaaggcgatgtggct
taccgcgtcaccgacctgattgacgtgaccatcgccgaagtgcgtatggaaacccgcagc
gtcgttgcccgtccggttgtctga
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